Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1776
         (680 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A1X5 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A6LFN7 Cluster: Putative lipopolysaccharide biosynthesi...    33   4.9  
UniRef50_Q4N8X3 Cluster: Putative uncharacterized protein; n=2; ...    33   8.5  
UniRef50_Q25803 Cluster: Rps2 protein; n=2; Plasmodium|Rep: Rps2...    33   8.5  

>UniRef50_Q8A1X5 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 537

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 487 YNFFFVSTINCTFTVMIRKYKIVVCN-KFMYYTTILSCYIEFNSG 356
           + F  +  I C F+  + + K  +CN K  YYT I+SC+++   G
Sbjct: 37  FMFTGLGVIGCFFSFYLFRGKRFICNAKCCYYTVIISCFLQAGYG 81


>UniRef50_A6LFN7 Cluster: Putative lipopolysaccharide biosynthesis
           protein; n=2; Parabacteroides|Rep: Putative
           lipopolysaccharide biosynthesis protein -
           Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
           / NCTC11152)
          Length = 481

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 581 FKLSIYNKIEITYKDY-YFFVFKNIDTYCLYVI*FF 477
           F +++ NK++ T+KDY   F F  + + CLY++ FF
Sbjct: 65  FSVALTNKLDATHKDYNAVFWFSFVVSICLYIVLFF 100


>UniRef50_Q4N8X3 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 246

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 599 YSGVKLFKL--SIYNK-IEITYKDYYFFVFKNIDTYCLYVI*FFFC 471
           YS V LFK+  S+Y+K   I +KD Y F+FKN     +Y +    C
Sbjct: 171 YSFVLLFKIIQSLYSKKFSILHKDIYVFLFKNHFFLLIYTLYSLLC 216


>UniRef50_Q25803 Cluster: Rps2 protein; n=2; Plasmodium|Rep: Rps2
           protein - Plasmodium falciparum
          Length = 227

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -1

Query: 578 KLSIYNKIEITYKDYYFFVFKNIDTYCLYVI*FFFCFNYKLYIY-GNDS*IQNRCM**VY 402
           K+ I N  +  Y D Y +++K    YC+    F   + YKLY+Y  N S + N+ +   +
Sbjct: 12  KIYIGNIYKNIYFDNYKYIYKIKFNYCILNFTFIALYLYKLYLYIYNISLMNNKIL---F 68

Query: 401 VLYNNFIVLYRVQL 360
           +  NN I  + +++
Sbjct: 69  INNNNLIKNFTIKI 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,848,806
Number of Sequences: 1657284
Number of extensions: 9679996
Number of successful extensions: 20641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20599
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)