Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1776
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    28   1.1  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    28   1.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.4  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.8  

>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 590 VKLFKLSIYNKIEITYKDYYFFVFKNIDTYCLYVI 486
           V++   S ++ ++   + Y FF FK+ DTY +Y++
Sbjct: 246 VRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV 280


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = -1

Query: 239 MFKTNATSCVKWFVSFIDFVIT*NRFFCFLIFRRMFYNVFFIVALQIIVEKSRLKYYFLV 60
           + K + T  + +F+SF    I  +    FL+++ +   +FFI  L + + K  L+ ++  
Sbjct: 2   VLKHSVTYNLSFFISFTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLNLTKVGLRRFWSQ 61

Query: 59  KP 54
            P
Sbjct: 62  SP 63


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 199 CHSLTSLLRKIGFSAF*FLGECSTTFFLLLLYR 101
           CH   S ++ I F +  F GEC  T+     YR
Sbjct: 834 CHPFKSQVKVIDFGSSCFEGECVYTYIQSRFYR 866


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 475 FVSTINCTFTVMIRKYKIVVCNKFMYYTTILSCYI 371
           F++TI C F V    YKI +CN+++ +      YI
Sbjct: 35  FLNTIVCIFYV----YKIALCNEYIRFLAKCFLYI 65


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 205 HFTQLVALVLNIQSKKAITSVIYC 276
           HF +L+ + L  QSKK + S++ C
Sbjct: 48  HFLELIFINLKYQSKKWLYSLVIC 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,689
Number of Sequences: 5004
Number of extensions: 45725
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)