Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1776
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   4.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   6.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.2  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 392 CIIHKLITYNDFV 430
           CIIH  +T+ DF+
Sbjct: 40  CIIHMGLTFKDFI 52


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 389 CCIIHKLITYND 424
           CC +H L  YND
Sbjct: 145 CCGVHSLSDYND 156


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 424 IVVCNKFMYYTTILSCYIEFNSG**TSQLG 335
           + +C+ FM   T +  Y  FN+G     LG
Sbjct: 90  LAICDFFMMIKTPIFIYNSFNTGFALGNLG 119


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 627 TTHNTHYMFVNMDNNYLN 680
           T HN +Y +   +NNY N
Sbjct: 88  TIHNNNYKYNYNNNNYNN 105


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 627 TTHNTHYMFVNMDNNYLN 680
           T HN +Y +   +NNY N
Sbjct: 88  TIHNNNYKYNYNNNNYNN 105


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 380 VLYRVQLGLINVTAWLRFSFYL 315
           V +     ++NVT W+ F+ Y+
Sbjct: 407 VFFPFLFAVLNVTYWIMFAEYI 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,898
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)