Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1775
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.71 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    28   1.2  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   5.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 504  PTAGHRPSPMPST*CGPPPSASNGLPAVRT-KSSV 403
            P+AG  P P+P+    P P+ S+  P+V T +SSV
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 498  AGHRPSPMPST*CGPPPSASNGLPAV 421
            +G  P P PS    P P+ S+G+P V
Sbjct: 1156 SGAPPVPKPSVAAPPVPAPSSGIPPV 1181


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 286 YCVYRLRTIITNQSSRNRSMKLNNSETV 203
           YC+ + + ++T Q +RNRS  + N   V
Sbjct: 466 YCIDKQKPLLTTQRTRNRSHTIGNQAVV 493


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 475 AFHIMRSSAFGIQRTSRRAH*VVSPPGWRTPHAPR 371
           A H  R++A GIQ+T   +  +V+   +R+ +AP+
Sbjct: 406 AGHYKRATAIGIQQTLANSSGIVAGQIYRSKNAPK 440


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 477 MPST*CGPPPSASNGLPAVRTKSSV 403
           +PS+  G  PS S+ LP++ TKS++
Sbjct: 163 LPSSPKGDSPSLSSSLPSLTTKSNL 187


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 428  PPCALSRQSTWLEDAPRSSY 369
            PP  L    TW+++AP S++
Sbjct: 1014 PPSELKESVTWIKEAPPSNF 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,805
Number of Sequences: 5004
Number of extensions: 58450
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)