Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1775
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0873 + 21202630-21204021 33 0.14
01_06_0166 + 27145250-27145778,27146062-27146516 33 0.18
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 32 0.42
12_01_0710 - 6155357-6155708,6156354-6156604,6158874-6158987 30 1.3
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 30 1.3
02_05_1236 + 35141404-35142731,35142753-35143089,35143228-351433... 30 1.3
11_05_0086 + 18964493-18965737,18965896-18966360 30 1.7
12_02_1060 - 25752181-25754229 29 3.9
08_02_1020 - 23661507-23661517,23663328-23663464,23663704-23663915 29 3.9
07_01_1054 + 9250298-9250428,9250889-9251489 29 3.9
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 29 3.9
05_02_0146 + 7076818-7077264 29 3.9
02_05_0963 - 33126238-33126831 29 3.9
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 29 3.9
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 5.1
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 28 6.8
09_02_0468 - 9608922-9610061 28 6.8
04_01_0314 - 4243928-4244361,4245178-4245415 28 6.8
09_02_0082 - 4060018-4061604 27 8.9
06_03_0905 + 25843547-25844314 27 8.9
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157... 27 8.9
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 8.9
>10_08_0873 + 21202630-21204021
Length = 463
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -2
Query: 443 HPTDFPPCALSRQSTWLEDAPRSSYPSVASIR-GLSPP--PGVAGSTDVYCPYILLLCLQ 273
HPT F P +L R WL A R+ P++ G+S P P + GS C C+
Sbjct: 235 HPTSFHPASLPRLRAWLARARRARRPALMLFSGGVSRPSRPNIRGSILAECANRTDACVV 294
Query: 272 IE 267
++
Sbjct: 295 VD 296
>01_06_0166 + 27145250-27145778,27146062-27146516
Length = 327
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 335 GGKVLEWRPRMGTRSVGRP--PTRWTDDLVRTAGSPLDAEGGGPHYVEGIGEG 487
GG E R R G R GR +RWT G+ L A GGG + G+G G
Sbjct: 6 GGGRSERRRRRGRRRAGRAGDDSRWTWWRQAAQGAGLAAAGGGGDWRRGVGRG 58
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -1
Query: 486 PSPMPST*CGPPPSASNGLPAVRTKSSVHLVGGRPTLLVPIRGLHSR 346
P P+P C PPPS P R +V L G P P RGL R
Sbjct: 269 PLPVPGVICRPPPSPPYFAPPPRATPTVSLAGPPPG-FNPKRGLIGR 314
>12_01_0710 - 6155357-6155708,6156354-6156604,6158874-6158987
Length = 238
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 357 LHSRTFPPTWRRWLDRCILSLHTSIV 280
L R FPP WR WL +LS TS V
Sbjct: 37 LQQRAFPPRWRNWLG-ALLSTSTSQV 61
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Frame = +1
Query: 334 GGESPRMEATDGYEERGASSNQVD*RLSAHGGKSVGCRRR-RTALCGRHWGRPMSSSGQI 510
GGES E TD ASS S S G RR A G WGR S+ I
Sbjct: 113 GGESVGREDTDTNTNTTASSANASTSSSTAASGSSGARRNGAAAAAGEGWGRSSLSTATI 172
Query: 511 KADDD 525
+
Sbjct: 173 NLSQE 177
>02_05_1236 +
35141404-35142731,35142753-35143089,35143228-35143305,
35143395-35143703,35144449-35144572,35144620-35144789
Length = 781
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = -2
Query: 566 HAKFLLT*LNILDSSSSAFICPLLDIGLPQCLPHNAVLRLRHPTDFPPCALSRQSTWLED 387
HA+ LL L + ++S +CP L G P LR+ D PC + Q + D
Sbjct: 39 HAQLLLLGLPLPAPTASRLLCPHLRSGNPSA-TLRLFLRVLRDRDRRPCPVDSQED-VPD 96
Query: 386 APRSSYPSVASIRGLSPPPG 327
+ S A SP PG
Sbjct: 97 SSSFSAALAACSHHASPSPG 116
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -1
Query: 573 LNTR*VFTYLAKHT*FIIISLYLPTAGHRPSPMPST*CGPPPSASNGLPAVRTKSSVHLV 394
L++R T+ A HT ++ P H S GPPP + P S+ L
Sbjct: 45 LSSRWRHTFAAVHT-VSLVEPDPPVVDHYELARYSPGWGPPPDPNQPPPFTNVVSAALLA 103
Query: 393 GGRPTLLVPIRGLHSRT 343
R + P+R LH T
Sbjct: 104 RHRRAAVPPLRALHVST 120
>12_02_1060 - 25752181-25754229
Length = 682
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 486 PSPMPST*CGPPPSASNGLPAVRTKSSVHLV 394
PSP P+ PPPS S GL A T +V V
Sbjct: 263 PSPPPAPPAPPPPSVSIGLVAGLTVGAVSFV 293
>08_02_1020 - 23661507-23661517,23663328-23663464,23663704-23663915
Length = 119
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 324 DARWGGKSSNG--GHGWVRGAWGV-LQPGGLTT*CARREVRWMPKAEDRIMWKALGKA 488
D +W G+ G W+R A + PGGL ARR R M + D + G+A
Sbjct: 53 DDKWWGRPKTVVVGRSWLREAGAACVAPGGLVRAMARRPARSMEREADITDDRGAGEA 110
>07_01_1054 + 9250298-9250428,9250889-9251489
Length = 243
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +2
Query: 326 RQVGGKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSPLDAEGGG 457
R GG+V W G PPTR T R L+ GGG
Sbjct: 154 RGTGGRVQRWGTGGDNGGDGEPPTRQTRPDPRWTSLYLEPSGGG 197
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Frame = -3
Query: 403 PPGWRTPHAPRT--HPWPPFEDFPPH 332
PP PH P HP PP PPH
Sbjct: 45 PPHHHPPHHPHPPHHPHPPHHPHPPH 70
>05_02_0146 + 7076818-7077264
Length = 148
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 280 HNRSM*GQYTSVEPATPGGGESPRMEATDGYEERGASSNQ 399
H R+ G SV A PGGG E + EE+G +
Sbjct: 22 HRRARGGARFSVSAAAPGGGVKEEEEEEEEEEEKGTRGKE 61
>02_05_0963 - 33126238-33126831
Length = 197
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -2
Query: 494 DIGLPQCLPHNAVLRLRHPTDFPPCALSRQSTWLEDAPRSSYPSVASIRGLSPPPGVAGS 315
D+ P P + R P ALS + P+ + ++ S LSPPPG A
Sbjct: 60 DLNFPDS-PPSCDARSSDPRQVQAAALSHANR-AHVTPQQAAAALMSPPSLSPPPGFATG 117
Query: 314 TDVYCPYI 291
++V P +
Sbjct: 118 SEVVAPAV 125
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 IGDYSPQSVNT-IEVCKDNIHLSSQRRQVGGKVLEWRPRMGTRSVGRPPTRWTDDL 415
I D PQ ++ + C D L R ++ R GT S +P RWT +L
Sbjct: 219 IYDRPPQLMSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGTASCNKPRLRWTPEL 274
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.3 bits (60), Expect = 5.1
Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Frame = +1
Query: 310 SVEPATPGGGE-----SPRME---ATDGYEERGASSNQVD*R--LSAHGGKSVGCRRRRT 459
S EP T G GE PR + + G R +S + D LSA G + CR RT
Sbjct: 325 STEPPTEGNGELYCILPPRNDHSGRSSGDSSRSTASRKHDDSASLSAEGDGELYCRLPRT 384
Query: 460 ALCGRHWGRPMSSSGQIKADDDESSMFS*VSKNLA 564
GR G S G SS S + K+++
Sbjct: 385 GHSGRSSGGSKRSFGAKGLIRRSSSFSSDIQKDVS 419
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = -3
Query: 403 PPGWR----TPHAPRTHPWPPFEDFPPHLASLA 317
P GWR PH P+ P PP+ P + LA
Sbjct: 840 PGGWRGQYYNPHQPQPQPQPPYPQPPYNAQGLA 872
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 504 PTAGHRPSPMPST*CGPPPSASNG-LPAVRTKSSVHLVGGRPTLLVPIRGLHSRTFPPTW 328
P++G P+P P T PP AS A+ SVH + +P++ + S P W
Sbjct: 28 PSSGTAPAPPPPTPADRPPRASPAPARAMGEDISVHGESSDESDTIPVQSVDS----PRW 83
Query: 327 R 325
R
Sbjct: 84 R 84
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 304 YTSVEPATPGGGESPRMEATDGYEERGASSNQVD*RLSAHGGKSVGC 444
YT PA P SPR+E T E+ AS R H + GC
Sbjct: 40 YTRDSPAPPHSSASPRIEETSWKAEQQASG-----RFCLHQEQEAGC 81
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -1
Query: 486 PSPMPST*CGPPPSASNGLPAVRTKSSVHLVGGRPTLLVPIRGLHSRTFPPTWRRW 319
P PMP P P+ S P V P++ P H T PT R+
Sbjct: 418 PIPMPPAPAPPVPTPSMPSPTVPAPPVTAAPATAPSVAAPAAVSHGLTLSPTTTRY 473
>06_03_0905 + 25843547-25844314
Length = 255
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 486 PSPMPST*CGPPPSASNGLP--AVRTKSSVHLVGG 388
P+P +T C PPP A+ P +++ + V L+GG
Sbjct: 154 PTPPTTTPCPPPPPATQRCPVDSLKIGACVDLLGG 188
>05_07_0226 -
28515052-28515064,28515426-28515502,28515610-28515767,
28515852-28515937,28516048-28516351,28516410-28517490
Length = 572
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 377 SSYPSVASIRGLSPPPGVAG 318
S PS+AS R + PPPG G
Sbjct: 351 SDAPSIASSRVIRPPPGATG 370
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 333 TWRRWLDRCILSLHTSIVF 277
TW RW+D+ I S T +VF
Sbjct: 571 TWARWVDKNIDSTRTQVVF 589
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,801,422
Number of Sequences: 37544
Number of extensions: 445666
Number of successful extensions: 1891
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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