Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1775
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    39   0.002
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    39   0.002
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    39   0.002
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    39   0.002
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    34   0.093
Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical p...    29   2.6  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    29   3.5  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    29   3.5  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    29   3.5  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 350 EWRPRMGTRSVGRPPTRWTDDLVRTAGSPLDAEG 451
           EWRP    R VGRPP RWTD L R   +  DA+G
Sbjct: 832 EWRPYGWKRPVGRPPMRWTDSL-RKEITTRDADG 864


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 350  EWRPRMGTRSVGRPPTRWTDDLVRTAGSPLDAEG 451
            EWRP    R VGRPP RWTD L R   +  DA+G
Sbjct: 1007 EWRPYGWKRPVGRPPMRWTDSL-RKEITTRDADG 1039


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 350 EWRPRMGTRSVGRPPTRWTDDLVRTAGSPLDAEG 451
           EWRP    R VGRPP RWTD L R   +  DA+G
Sbjct: 746 EWRPYGWKRPVGRPPMRWTDSL-RKEITTRDADG 778


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 350 EWRPRMGTRSVGRPPTRWTDDLVRTAGSPLDAEG 451
           EWRP    R VGRPP RWTD L R   +  DA+G
Sbjct: 358 EWRPYGWKRPVGRPPMRWTDSL-RKEITTRDADG 390


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 350 EWRPRMGTRSVGRPPTRWTDDL 415
           +W PR   R VGRPP RW D L
Sbjct: 143 DWCPRDEKRPVGRPPMRWNDSL 164


>Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical
           protein F48C5.1 protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -3

Query: 358 PPFEDFPPHLASLARQMYIVLTYFYCVYRLRTIITNQSSRNRSMKLNNSETVSR 197
           PP   + P + +L   + I++   YC+Y+ +    +  S+  +  +NN+ T+S+
Sbjct: 183 PPVCAYWPPVVTLLVFIVIIVLLAYCLYKFKVRNPHHYSKYSTTTINNNNTISK 236


>Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical
           protein C17G1.7 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 437 LDAEGGGPHYVEGIGEGLCPAV 502
           L     GPH ++GIG G  PAV
Sbjct: 215 LSGRPAGPHKIQGIGAGFAPAV 236


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 327 ARWGG-KSSNGGHGWVRGAWG 386
           +RWGG +   GG GW  G WG
Sbjct: 710 SRWGGGRGGWGGGGWGGGGWG 730


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 504 PTAGHRPSPMPST*CGPPPSASNGLPAVRTKSSV--HLVGGRPTLLVPIRGLHSRTFPPT 331
           P A  R + M +T      +   G+ + R +S++  HL  GR T+      LH RT PP 
Sbjct: 480 PNARSRSATMRATILIQEATTPKGIKSHRAQSNLTHHLRHGRCTMDASAVSLHRRTSPPD 539

Query: 330 WRR 322
           + +
Sbjct: 540 FEK 542


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 341 SPPPGVAGSTDVYCPYILLLCLQIEDYNHQSI 246
           SPPP V    D+  P ++L   QIE++  QS+
Sbjct: 148 SPPPYVDVPKDLLGPCVILQTRQIEEHKEQSV 179


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 374 RSVGRPPTRWTDDL 415
           R VG+PP RWTD L
Sbjct: 15  RPVGKPPMRWTDSL 28


>Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical
           protein B0391.3 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 422 CALSRQSTWLEDAPRSSYPSVASIRGLSPPPGVAGSTDVYCPYILLLCLQ 273
           CA      W  D  R SYP   S  G++    + GS+ V   Y  + C Q
Sbjct: 155 CAYVAYYFWPVDEDRVSYPDAMSFMGVAIMFLIVGSSFVAVVYFGIKCYQ 204


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -2

Query: 467 HNAVLRLRHPTDFPPCALSR---QSTWLEDAPRSSYPSVASIRGLSPPPGVAGSTDVYCP 297
           H+AV+  +    FP   L++      + E+      PS A + GL  PP V G    +  
Sbjct: 483 HDAVMIQK--IHFPESVLNQTWYSDEFFENLDDLERPSKAFVTGLYDPPIVQGINHDHTV 540

Query: 296 YILLLCLQIED 264
           + LL  L IED
Sbjct: 541 FALLAVLGIED 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,958
Number of Sequences: 27780
Number of extensions: 347090
Number of successful extensions: 1181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)