Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1775
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.083
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 0.083
 Identities = 29/112 (25%), Positives = 41/112 (36%)
 Frame = -3

Query: 526 HHHQPLSAHCWT*AFPNAFHIMRSSAFGIQRTSRRAH*VVSPPGWRTPHAPRTHPWPPFE 347
           HHH     H    A P+  H   ++    Q ++  AH    P   +  H P  HP PP  
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHH-QHSTPLAH-SSYPAAIQIGHTPHHHPHPPET 472

Query: 346 DFPPHLASLARQMYIVLTYFYCVYRLRTIITNQSSRNRSMKLNNSETVSRKF 191
             P     L    +        + +   IIT+Q    +S +LN   T   KF
Sbjct: 473 PGPQVETILQNACFCARNELMMILKEIKIITDQL---KSEELNAKVTNDWKF 521


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 486 PSPMPST*CGPPPSASNGLPAVRTKSSVHLVGGR 385
           P P P +  GP  +  + +  + TK +  L+ GR
Sbjct: 343 PPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGR 376


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 456  PPPSASNGLPAVRTKSSVHLVGGRPTLLVPIRGLHSRTFPPTWRRW 319
            PP S    L A  T S    V   PT   PI G ++  + P +  W
Sbjct: 1366 PPHSPQITLTATTTNSLTMKVRPHPTDNAPIHG-YTIHYKPEFGDW 1410


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 377 SSYPSVASIRGLSPPPGVAGSTDVYCPYILLLCLQIEDYN 258
           + +P +A I+    P  + G+T +   Y+L     I D N
Sbjct: 170 NEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDEN 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,381
Number of Sequences: 438
Number of extensions: 4798
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)