Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1774
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    86   5e-18
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    30   0.34 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.4  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   3.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.5  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   5.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.5  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   9.5  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 9/75 (12%)
 Frame = +3

Query: 162 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNH---------LMSEQEWRSIGVQQSQGWVH 314
           I+YS +Y D+E+EYRHV+LPK M+K +P ++         ++ E+EWR +G+ QS GW  
Sbjct: 25  IHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEM 84

Query: 315 YMTHQPEPHILLFRR 359
           Y  H PEPHILLF+R
Sbjct: 85  YEVHVPEPHILLFKR 99


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 162 IYYSQK-YYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGW 308
           IY SQ+ ++D          P++M  +VP ++ ++E+ W+ I +Q  QGW
Sbjct: 70  IYPSQQMFFDAMKRKNWNPHPEDMKTIVPIHNAVNERAWQDI-LQWEQGW 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 90  SN*GNRSLEIFLSRNLLRDIMSRDIYYSQKY 182
           SN  N S++ F  ++ + D+ S  +YY QKY
Sbjct: 389 SNLLNNSMKGFKGQSSVSDLYSERLYYKQKY 419


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
 Frame = +2

Query: 44  KGCDLNRIASNLRGRIKLRKPQLGNIFKSKSVA*HHVE---RHLLFPKIL*RRT*IQTCS 214
           K C  +   S+L  R+ +  PQ GN+  ++S      E   R  LF K +  RT  +   
Sbjct: 10  KSCFKSSQTSHLAARVAMENPQKGNVINAQSSRQPSSENEFRENLFFKEM--RTNGKNEH 67

Query: 215 TTKRDGKVSAKKPSNVRTRVAQHRCAAKSRLGALYDTSARTTYFIIPKEDNNTTRKK 385
            T     V  +   + +      +CA  S +    DT    T      ED +  RKK
Sbjct: 68  ETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKTALTKKYKSNEDVSRMRKK 124


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 524  LAFFFLNQMCTVYLNKIISENWLYLK 601
            L FF + Q+ T+  + + S+NW YL+
Sbjct: 1207 LMFFQMTQIMTIMEDYLRSKNWKYLR 1232


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 472 NYGPNLKLTYEKIIHFTAK*WDRKRIPYQFFSGGVVILLRNNKI 341
           NY    K +Y+K     AK +D+  IPY    G    +   +K+
Sbjct: 301 NYYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANFSKL 344


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 578 RLFCLDKRYTFDLKKKTLIYT 516
           + FC+D+RY F  K+ TL Y+
Sbjct: 890 KFFCIDERYHFLEKQWTLYYS 910


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 530 FFFLNQMCTVYLNKIISENWLY 595
           FFF+  +C + ++ II+  W+Y
Sbjct: 271 FFFIMSICPMVISLIIAPLWIY 292


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 500 SEQYLQYKLAFFFLNQM 550
           S Q LQYK+AF++ N +
Sbjct: 13  SPQQLQYKMAFYYKNNL 29


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 257 NVRTRVAQHRCAAKSRLGALYDTSARTTYFIIPKEDNNTTRKKLI 391
           N    + QHR  ++++L    + + +T Y +I     N  + K+I
Sbjct: 113 NFEKNLVQHRRNSQNKLKCAMEVNIKTNYIVILLTSINLKKLKMI 157


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 233 KVSAKKPSNVRTRVAQHRCAAKSRLGALYDTSARTTYFIIP 355
           KV+ K+PS+++          K  +G     S +T  FIIP
Sbjct: 266 KVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIP 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,073
Number of Sequences: 5004
Number of extensions: 56817
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)