Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1774
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321          116   2e-26
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867...    29   3.2  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    28   5.6  
07_03_1687 - 28673491-28674822                                         28   7.5  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    27   9.9  

>03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321
          Length = 90

 Score =  116 bits (279), Expect = 2e-26
 Identities = 47/66 (71%), Positives = 58/66 (87%)
 Frame = +3

Query: 162 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPH 341
           I YS+KY+D+ +EYRHVVLP E+ KL+PKN L+SE EWR+IGVQQS+GWVHY  H+PEPH
Sbjct: 4   IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63

Query: 342 ILLFRR 359
           I+LFRR
Sbjct: 64  IMLFRR 69


>03_05_0179 -
           21583234-21584336,21586274-21586358,21586665-21586713,
           21586801-21586874,21586958-21587050,21587120-21587174,
           21587348-21587421,21587702-21587814,21587911-21588168,
           21588915-21589012,21589139-21589256,21589754-21589848,
           21590001-21590159,21590336-21590525,21590881-21591021,
           21591142-21591176,21591659-21591699
          Length = 926

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 82  WEDQIKETAAWKYF*VEICCVTSCRETFII 171
           W D +   AA   + V+I  +TSCR+TF I
Sbjct: 519 WGDHVTLQAAADLYGVKITLLTSCRDTFYI 548


>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
            30208517-30208676,30208768-30208844,30208985-30209032,
            30209504-30209594,30209703-30210004,30210214-30210495,
            30210695-30211011,30211113-30211273,30211556-30211665,
            30211752-30211902,30212438-30212578,30212688-30212857,
            30213485-30213817,30213981-30214271,30214356-30214439,
            30214620-30214753,30214946-30215173,30215273-30215444,
            30215621-30215875,30215963-30216232
          Length = 1509

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 224  FW*YYMSVFMFFVIIFLGIINVS 156
            FW +Y+S F F    + G++NVS
Sbjct: 1368 FWFFYVSFFTFLYFTYYGMMNVS 1390


>07_03_1687 - 28673491-28674822
          Length = 443

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 91  QIKETAAWKYF*VEICCVTSCRETFIIPKNIMTKNMNTD 207
           ++KE AA KYF   IC V  C    +  +++  +N+  D
Sbjct: 106 RLKEDAARKYFQQLICAVDFCHSRGVYHRDLKPENLLLD 144


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
 Frame = +3

Query: 129 RNLLRDIMSRDIYYSQKYYDEEHEYRHVV------LPKEMVKLVPK--NHLMSEQEWRSI 284
           R  LRD++  D++  +KY+ E   Y HV       LP E + L+ K  + L +  E+  +
Sbjct: 656 RAKLRDML--DLFVKKKYFGEVQAYAHVTEFQKRGLPHEHILLIMKSGSKLTTPDEYDKV 713

Query: 285 GVQQSQGWVHYMTHQPEPHILLFRRRITTP 374
              +      Y    PE H+L  +  +  P
Sbjct: 714 ICAEIPDKAKY----PELHLLAIKHMLHGP 739


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,495,009
Number of Sequences: 37544
Number of extensions: 324573
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)