Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1774
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of m...   109   1e-24
AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase...   109   1e-24
AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical...   106   2e-23
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical...    29   3.8  
AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    29   3.8  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    28   5.0  
AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical...    28   6.7  

>U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 6 protein.
          Length = 94

 Score =  109 bits (263), Expect = 1e-24
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +3

Query: 153 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 332
           + D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5   NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64

Query: 333 EPHILLFRR 359
           E H+LLFRR
Sbjct: 65  ERHVLLFRR 73


>AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase
           subunit protein.
          Length = 94

 Score =  109 bits (263), Expect = 1e-24
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +3

Query: 153 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 332
           + D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5   NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64

Query: 333 EPHILLFRR 359
           E H+LLFRR
Sbjct: 65  ERHVLLFRR 73


>AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical
           protein Y71G12B.27 protein.
          Length = 118

 Score =  106 bits (254), Expect = 2e-23
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = +3

Query: 159 DIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEP 338
           DIYYS +Y D+E+EYRHV+LP+ + + VPK  L+SE EWR  GVQQS GW HYM H PE 
Sbjct: 3   DIYYSPRYEDDEYEYRHVILPQAVSRKVPKGRLLSEAEWRRAGVQQSLGWEHYMVHNPEK 62

Query: 339 HILLFRRR 362
           HILLFRR+
Sbjct: 63  HILLFRRK 70


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/87 (25%), Positives = 41/87 (47%)
 Frame = -3

Query: 434  YTFYS*MMGQKTHSISIFFWWCCYPPSE**NMWFWLMCHIVHPTLTLLHTDAAPLLF*H* 255
            Y+F+  M+     S+ +FF   CY      N+  W   H++   L +++T    L     
Sbjct: 1143 YSFWINMLDAVWQSLVVFF--ICYFTYRGSNVDMWTFGHLLVTQLIIVNTFHLALF---- 1196

Query: 254  MVFWH*LYHLFW*YYMSVFMFFVIIFL 174
            + +W   + +FW  ++SV +FF+   L
Sbjct: 1197 VQYW--TWPMFWSMFLSVLLFFICALL 1221


>AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical
           protein C18E3.9b protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 243 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 383
           P+N  M E    S+  Q  Q W+ +     + ++LL R ++  P EK
Sbjct: 40  PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85


>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 243 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 383
           P+N  M E    S+  Q  Q W+ +     + ++LL R ++  P EK
Sbjct: 40  PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 114  EIFLSRNLLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQ 293
            E FL    LR  + + + +  +    E+E R   + ++  +LV  NH MSEQ    + V+
Sbjct: 2754 ESFLDHTNLRSKLQKHMAFDSELV--ENEKRLSTVERQGEQLVTDNHFMSEQVKAQL-VE 2810

Query: 294  QSQGW 308
               GW
Sbjct: 2811 LRSGW 2815


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 114  EIFLSRNLLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQ 293
            E FL    LR  + + + +  +    E+E R   + ++  +LV  NH MSEQ    + V+
Sbjct: 2754 ESFLDHTNLRSKLQKHMAFDSELV--ENEKRLSTVERQGEQLVTDNHFMSEQVKAQL-VE 2810

Query: 294  QSQGW 308
               GW
Sbjct: 2811 LRSGW 2815


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 114  EIFLSRNLLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQ 293
            E FL    LR  + + + +  +    E+E R   + ++  +LV  NH MSEQ    + V+
Sbjct: 2754 ESFLDHTNLRSKLQKHMAFDSELV--ENEKRLSTVERQGEQLVTDNHFMSEQVKAQL-VE 2810

Query: 294  QSQGW 308
               GW
Sbjct: 2811 LRSGW 2815


>AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical
           protein K09C6.1 protein.
          Length = 661

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 623 LPYEYESLLSITSFLRLFCLDKRYTFD--LKKKTLIYTVDTVQ 501
           L Y Y+        +  F  DK+ T+D  +++  LI++VD +Q
Sbjct: 269 LNYLYDGCADFVPLVACFIADKKLTYDTFMEEMNLIFSVDVMQ 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,487
Number of Sequences: 27780
Number of extensions: 316567
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)