Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1773
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-2|CAB07605.1|  374|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U97015-7|AAB52348.1|  299|Caenorhabditis elegans Defective sperm...    29   4.2  
U36483-1|AAA97861.1|  299|Caenorhabditis elegans SPE-11 protein.       29   4.2  
AC024777-3|AAF60562.3|  563|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z73969-3|CAA98234.1|  143|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z93381-2|CAB07605.1|  374|Caenorhabditis elegans Hypothetical
           protein F28G4.2 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 124 SYLKRLNYYTTSYPLENLSTNTKDIFNYEINIFQ-IKCMTFDLLSNSVPIKNLLKHLRNI 300
           SYLK LNY     P E +  +T   FN   N+ + +    F ++ +S  +  +L H+ NI
Sbjct: 38  SYLKALNYLANQIPFEVIHDDTD--FNEFANVLKAMPEAPFVIMYDSSNVDVVLNHICNI 95


>U97015-7|AAB52348.1|  299|Caenorhabditis elegans Defective
           spermatogenesis protein11 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 YEINIFQI--KCMTFDLLSNSVPIKNLLKHLRNIYRK 309
           ++ N +Q+  KC+  D  SN   +K+++++++  YRK
Sbjct: 257 HKFNAYQLDLKCLDEDAFSNKKSLKSVVRNVQKFYRK 293


>U36483-1|AAA97861.1|  299|Caenorhabditis elegans SPE-11 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 205 YEINIFQI--KCMTFDLLSNSVPIKNLLKHLRNIYRK 309
           ++ N +Q+  KC+  D  SN   +K+++++++  YRK
Sbjct: 257 HKFNAYQLDLKCLDEDAFSNKKSLKSVVRNVQKFYRK 293


>AC024777-3|AAF60562.3|  563|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.3 protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 448 HSCNTC---LCYEILQFISFTLIT*LAMSKNVLNDYIYIIVNE 329
           H C  C   LC+   +F+SF     L  S N L D  +IIV E
Sbjct: 199 HHCRLCGRVLCHSCSKFLSFDTAKTLTSSSNPLGD-THIIVEE 240


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical
           protein F16D3.4 protein.
          Length = 1232

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 337 VNEIFVRN*IFDRYYVDVLKDFLSVRC 257
           ++EI + N + D YY+++L DFL   C
Sbjct: 675 ISEIRLEN-VSDDYYMEILDDFLKASC 700


>Z73969-3|CAA98234.1|  143|Caenorhabditis elegans Hypothetical
           protein C12D8.4 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 469 DIQLNLYHSCNTC-LCYE 419
           D ++N+YH CNT  LCY+
Sbjct: 85  DPKVNIYHKCNTIGLCYQ 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,914
Number of Sequences: 27780
Number of extensions: 265647
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)