Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1773
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.69 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 246 IKCHTFDLKYIYFIIEYVFCVC 181
           + C    +KY+ FI  +VF VC
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVC 22


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 187 TKDIFNYEINIFQIKCMTFDLLSNSVPIKNLLKHLRNIYRKF 312
           TKDI   E   F   C +     NS+  +  +K   N+Y +F
Sbjct: 608 TKDIKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVYPEF 649


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 577 IDFFLF*ITKPSLRTN*YSYPVNILIIMYWKLTRLDLAGY 696
           +DF +F     S+      + V++ +   W  +RLD+  Y
Sbjct: 13  VDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,254
Number of Sequences: 438
Number of extensions: 3758
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)