Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1772
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   4.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   4.5  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    26   4.5  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.9  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 540 STNMTIKLIVYYRYNLNKTYNALVKSIYY 626
           + + T K++ YY+  LNK +N  + +I++
Sbjct: 6   AVDTTPKIVFYYKCLLNKNWNEPINNIFW 34


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 579  YNLN-KTYNALVKSIYYFIGI 638
            Y +N + YNAL++SIY FI +
Sbjct: 1303 YKVNYEIYNALIRSIYRFINV 1323


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 527 LLSVVFFLNSCVNLCGTFATCLC-IYLIFIKKK*NCYYNILFCI 399
           LL ++ FLN+ V +   +   LC  Y+ F+ K   C+  IL C+
Sbjct: 29  LLKIILFLNTIVCIFYVYKIALCNEYIRFLAK---CFLYILRCM 69


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 618 SISLTHCTFCLGCIDNKRLVLLS 550
           SISL  C  C GCI +   VL++
Sbjct: 58  SISLNDCLACSGCITSAETVLVN 80


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 218 YYYSVNGP-SCLSVYCIRLD 162
           Y Y  NG  SC S+Y IRLD
Sbjct: 25  YLYKPNGKTSCCSLYTIRLD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,381
Number of Sequences: 5004
Number of extensions: 51005
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)