Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1771
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 92 8e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 86 4e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 85 9e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 61 2e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 2e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 47 2e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 32 0.086
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 31 0.11
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.20
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 1.8
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 27 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 4.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 7.5
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 25 7.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.5
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (421), Expect = 2e-44
Identities = 82/119 (68%), Positives = 90/119 (75%)
Frame = +2
Query: 314 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 493
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 494 THIMFETFNTPAMYVCHSSRALAVRVRSYHPYLAGLPRRCLPHPCPFYEGYALPHAILR 670
T I+FETFN PA YV + L++ + + H P YEGYALPHAI+R
Sbjct: 120 TQIIFETFNAPAFYVAIQA-VLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMR 177
Score = 120 bits (289), Expect = 2e-28
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +1
Query: 139 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAHEQ 318
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA +
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 319 K 321
+
Sbjct: 62 R 62
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 91.9 bits (218), Expect = 8e-20
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Frame = +2
Query: 320 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 496
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 497 HIMFETFNTPAM-YVCHSSRALAVRVRSYHPYLAGLPRRC---LPHPCPFYEGYALPHAI 664
+ET N PA+ + AL R+ G+ C L H P Y+G+++P AI
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASART-----TGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/51 (56%), Positives = 37/51 (72%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 309
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEA 62
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 86.2 bits (204), Expect = 4e-18
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +2
Query: 332 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFE 511
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 512 TFNTPAMYV 538
+FN +Y+
Sbjct: 149 SFNCAGLYI 157
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 306
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 85.0 bits (201), Expect = 9e-18
Identities = 40/117 (34%), Positives = 67/117 (57%)
Frame = +2
Query: 320 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTH 499
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 500 IMFETFNTPAMYVCHSSRALAVRVRSYHPYLAGLPRRCLPHPCPFYEGYALPHAILR 670
MFE + +YV + L++ + + + H P YE L H + R
Sbjct: 122 TMFERYGFGGVYVAIQA-VLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
Score = 53.2 bits (122), Expect = 3e-08
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 145 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 309
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEA 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/94 (35%), Positives = 45/94 (47%)
Frame = +2
Query: 281 RRTLM*EMRHMSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 460
RR E + S G + +K I +G V NWD +W + +L+ P EHP+L+TE
Sbjct: 48 RRLFGEEYIYKSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEP 106
Query: 461 PLNPKANREKMTHIMFETFNTPAMYVCHSSRALA 562
NP NR K MFE+ PA Y+ A
Sbjct: 107 FDNPPENRVKTLETMFESLRCPATYLAKQETCAA 140
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 243
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +2
Query: 344 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNT 523
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT ++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 524 PAM 532
P++
Sbjct: 145 PSV 147
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 252
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +2
Query: 353 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNTPAM 532
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 533 YVCHSSRALA 562
Y+ + +A
Sbjct: 134 YLTKQAVCVA 143
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAHEQK 321
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 322 RYPDPQIPHRTRN 360
P ++ + N
Sbjct: 62 PIPGMEVKNGKSN 74
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.9 bits (69), Expect = 0.086
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 202 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAHEQKRYPDPQIP 345
G+ PRA F ++ P H G+++ M KD G+E K + P+ P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +2
Query: 344 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTHIMFE 511
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 512 TFNTPAMYVCH 544
P + +
Sbjct: 172 ECQVPGFTIAY 182
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 404 FYNELRVAPEEHPVLLTE--APLNPKANREKMTHIMFETFNTP 526
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.20
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -3
Query: 317 CSCASS--PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAAT 147
C+ ++S PT S P+ PT+ P P N S P PL+TTN T
Sbjct: 393 CTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTT 452
Query: 146 SSS 138
S+S
Sbjct: 453 STS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 310 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 221
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 388 LLHVIPVSDDSVFDGVFEGQDTSFAHVPH 302
LL + +D V + +F+G D F +PH
Sbjct: 175 LLQCKVIPEDQVHENMFKGADVPFKRIPH 203
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 340 FEGQDTSFAHVPHLLH 293
FEG +T FA++ HLLH
Sbjct: 544 FEGLETFFAYIVHLLH 559
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 302 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 186
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 665 GWRGGVRILRRMGTGVGDTVAGVQQDTGGTTGR 567
G RGG R G G GDTV GG GR
Sbjct: 128 GGRGG-RYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 184 TYRSHCLLPTRQLLRRTS*ISEI 116
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 550 PCSRCTRPVVPPVSCWTPATVSPTPVPILRRIRTPPRHP 666
P + P V P S P +PTP P + PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 446 LLTEAPLNPKANREKMTHIMFETFN 520
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 469 PQGQQRE-----DDPHHVRNIQHARHVRLP-FKPCSRCTRPVVPPVSCWTP 603
P GQQ DDP+HV I + +++P F+ + P PPV W P
Sbjct: 59 PSGQQVHCQYVLDDPNHVEGISVDQSLQVPKFEKNWLISPPGSPPVG-WEP 108
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 536 VCHSSRALAVRVRSYHPYLAGLPRR 610
V + S + A S+HPY +GLP+R
Sbjct: 438 VSNVSESPAASNGSHHPYASGLPQR 462
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 343 VFEGQDTSFAHVPHLLHKSPSVPYRPSRPDGG 248
VF+ DT VP L+ K S+P S G
Sbjct: 548 VFDQDDTDLEPVPRLMSKVESIPAGASSDKSG 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,399
Number of Sequences: 5004
Number of extensions: 69778
Number of successful extensions: 208
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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