Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1769
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 27 1.6
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 26 3.7
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 25 6.5
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 6.5
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 6.5
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 25 8.7
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 25 8.7
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 25 8.7
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 25 8.7
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 1.6
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 4/153 (2%)
Frame = -3
Query: 560 VDELTVHLVSSGTEAHRHLQRKSATHLEI*VLKSQYSYKGCPALQTETHYCFTAE---IV 390
+D + S GT A R +QR T +E+ + Y G + T+ T + +
Sbjct: 234 IDAIGGRRFSEGTSADREIQR---TLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLR 290
Query: 389 PNRADSQDVLPPVNKSK*QTGKQQ-LPCPLKSNTHRRSIVFTEPAILIVQEIGDGVDLSY 213
P R D + +P N + G+ + L L+ + + I + A++ + + +G DL
Sbjct: 291 PGRLDRKIEIPLPN----EVGRMEILKIHLEKVSKQGEIDYE--ALVKLTDGTNGADLRN 344
Query: 212 QVTAGGGRGIITPRDFVILRRTALLSREGRVVD 114
VT G I RD+VI ++ L+S +V D
Sbjct: 345 VVTEAGFIAIKEDRDYVI--QSDLMSAARKVAD 375
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/69 (23%), Positives = 25/69 (36%)
Frame = -1
Query: 565 DGWMSSQSTWCQVVPKPIDIYNVKAPPTLRYEF*SLSIVTKAAPPFRPKRITASRQKLCL 386
+ W ++ P P YN PP +F + + A PP RI+ +
Sbjct: 83 NSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSYAPPPSGRPRISYPYPPGYM 142
Query: 385 TVRTHKTSY 359
+ H T Y
Sbjct: 143 CYKCHNTGY 151
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 64 PGT*TLTPLLMYPWGLSSTTRPSRESSAVRRRITKSRGVIMP 189
PG LT + +PW S S+ +S R+ K G P
Sbjct: 125 PGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYP 166
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 433 PFRPKRITASRQKLCLTVRTHKTSYHQLIRA 341
PF P + +++LC V K Y Q+I A
Sbjct: 3 PFSPSQTNFEKEQLCFGVYQLKDCYQQVIEA 33
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 110 NPHGYISSGV--SVQVPGYPPLKEMVR*AMSRFCVIYA 3
NP+GYI G+ S +PG P + FC+ YA
Sbjct: 76 NPNGYIKYGIFLSYPIPGTNPAQYGKGRLDIAFCLFYA 113
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 82 TPLLMYPWGLSSTTRPSRESSAVR 153
+PL+ P GL+ T RPSR VR
Sbjct: 418 SPLVTSPSGLNPTGRPSRFGGRVR 441
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/85 (22%), Positives = 35/85 (41%)
Frame = -3
Query: 608 LLLPNTPETLFLLVRWVDELTVHLVSSGTEAHRHLQRKSATHLEI*VLKSQYSYKGCPAL 429
L +P T + V D+L + + +G +H + S + + S + + +L
Sbjct: 128 LEIPETQPQVRCNVNVTDDLVIKSLRAGLMSHPDVNSSSISTMRTSTSPSNWIHSASASL 187
Query: 428 QTETHYCFTAEIVPNRADSQDVLPP 354
TH + P+ ADSQ+ P
Sbjct: 188 DDNTHNLGSFVTNPH-ADSQECPTP 211
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 152 GAGSRSHEGLLCLVPRQPSPG 214
G G+ H G VPRQ +PG
Sbjct: 211 GGGNHQHVGHSTTVPRQSAPG 231
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 152 GAGSRSHEGLLCLVPRQPSPG 214
G G+ H G VPRQ +PG
Sbjct: 211 GGGNHQHVGHSTTVPRQSAPG 231
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 604 YFPIPLKLFFYWLDGWMSSQSTWCQVVPKPI-DIYNVKAPPTLRYEF*SLSIVTK 443
YF ++ F + ++GW+ S + C P + D+Y AP T++ + SI +K
Sbjct: 504 YFGERMEGFVFTVNGWVQSYGSRCVRPPIIVGDVYR-PAPMTVKESQYAQSITSK 557
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 152 GAGSRSHEGLLCLVPRQPSPG 214
G G+ H G VPRQ +PG
Sbjct: 211 GGGNHQHVGHSTTVPRQSAPG 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,535
Number of Sequences: 5004
Number of extensions: 53223
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -