Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1769
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344...    31   0.71 
10_03_0020 - 7126478-7126698,7127665-7127763,7127813-7128140           27   8.8  
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844...    27   8.8  
02_01_0667 - 4958924-4959523                                           27   8.8  

>07_03_0328 +
           16833423-16833541,16833638-16833791,16834449-16834490,
           16834964-16835104,16835471-16835728,16835857-16836492
          Length = 449

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
 Frame = -3

Query: 197 GGRGIITPRDF----VILR--RTALLSREGRVVDDNPHGYISSGVSVQVP 66
           GGRG+   RD     ++LR  R ALL+  GRV+DD+P   I+S V+  +P
Sbjct: 39  GGRGLAAARDLRRGELVLRAPRAALLT-SGRVMDDDPR--IASSVASHLP 85


>10_03_0020 - 7126478-7126698,7127665-7127763,7127813-7128140
          Length = 215

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 586 KLFFYWLDGWMSSQSTWCQVVPKPIDIYNVKAPPTLRY 473
           +L + W   W S++ TW  +   P+    + AP   RY
Sbjct: 39  RLAYPWHTSWRSTRRTWWLLSAMPVTARGLHAPIISRY 76


>02_05_1240 +
           35181983-35182615,35183025-35183856,35183936-35184497,
           35184581-35184722,35184832-35184939,35185055-35185267,
           35185355-35185465,35185684-35185878,35186094-35186268,
           35186379-35186413
          Length = 1001

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = -3

Query: 386 NRADSQDVLPPVNKSK*QTGKQQLPCPLKSNTHRRSIVFTEPAILIVQEIGDGVDLSYQV 207
           +R++S++     N  +  + + QL    +S    RS   T P+++ VQ +G  +  ++  
Sbjct: 225 SRSNSRNAFDSPNPIRPDSSRAQLQSRSESMNGLRS-GSTSPSLVRVQSLGSSISHNFAS 283

Query: 206 TAGGGRGIITPRDFVILRRT 147
             G      T  D  ++RRT
Sbjct: 284 AVGSSISRSTTPDPQLIRRT 303


>02_01_0667 - 4958924-4959523
          Length = 199

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 91  LMYPWGLSSTTRPSRES--SAVRRRITKSRGVIMPRPPP 201
           L YP       RP+  S  S V    T+ R V+ PRPPP
Sbjct: 90  LTYPAAAVVAARPATSSLSSTVESFGTRPRPVLPPRPPP 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,743
Number of Sequences: 37544
Number of extensions: 440307
Number of successful extensions: 1169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)