Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1769
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    33   0.12 
Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.        28   4.5  
Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 544 STWCQVVPKPIDIYNVKAPPTLRYEF*SLSIVTKAAPPFRPKRITAS 404
           +T   VVPKP     VK  P L   F   + +TKA  P +P++ T +
Sbjct: 439 TTKSHVVPKPTKKGTVKVTPKLELSFDEPTEITKAPHPVKPRKTTTT 485


>Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical
           protein T23G11.3 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 291 PQKEHCLY*TS-DSNRSGNRRWRGPI---VPGDGWRGTRHNNPS*LRDPAPDRATL 136
           P +   +  TS D + S  +R+  PI   VP D W  TR +  S +R P P R TL
Sbjct: 23  PSRSSVMTPTSLDGDNSPRKRF--PIIDNVPADRWPSTRRDGWSSVRAPPPARLTL 76


>U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 291 PQKEHCLY*TS-DSNRSGNRRWRGPI---VPGDGWRGTRHNNPS*LRDPAPDRATL 136
           P +   +  TS D + S  +R+  PI   VP D W  TR +  S +R P P R TL
Sbjct: 23  PSRSSVMTPTSLDGDNSPRKRF--PIIDNVPADRWPSTRRDGWSSVRAPPPARLTL 76


>Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical
           protein F58G1.1 protein.
          Length = 965

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = -3

Query: 407 FTAEIVPNRADSQDVLPPVNKSK*QTGKQQLPCPLKSNTHRRSIVFTEPAILIVQEIGDG 228
           FT E V  RA   + L  V+ +  Q  +  L  P   NT  R +VF    +  +  +G+G
Sbjct: 208 FTREAVARRATDSN-LDSVSLAYQQILELALTQPCLRNT-ARYVVFDHGKMFFIDPLGEG 265

Query: 227 VDLSYQVTAGGGRGII 180
            +    V  G G+ ++
Sbjct: 266 FEKCDVVDVGDGKQVV 281


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 305 LKSNTHRRSIVFTEPAILIVQEIG-DGVDLSYQVTAGGGRGIITPRD 168
           L ++  RRSI+ +   + +++E G DGVD+ ++    GG    TP D
Sbjct: 112 LTADHSRRSILISN-FVKVIKEYGFDGVDIDWEYPVTGGAVEGTPAD 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,528
Number of Sequences: 27780
Number of extensions: 324784
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)