Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1767
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    28   0.87 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.7  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   6.2  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   8.1  

>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 401 SVE*DNSYYSTIISFPQ**ISVFQIHYKTSHQSRMTTGYSLVCSIGS 541
           SV+  NS   T   +P   +++ + H K+S +S +  GY+L C+I S
Sbjct: 183 SVKTSNSKGET--RYPVKAVNILKAHGKSSRESVLVKGYALNCTIAS 227


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 436 NLISPVVNKCFSNSLQNLTSVTDDYWLLSCMFHWECSEELLEMI 567
           + +  + ++   NS   +  + D  W   CMF +   EELL +I
Sbjct: 593 SFVKQLPSRILINSTACVNVILDRIWCELCMFSYFREEELLSVI 636


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 438 SHFPSSK*VFFKFITKPHISHG*LLVTLLYVPLGVL 545
           S FP++K  F  F+T     HG  L+ +L++ L +L
Sbjct: 526 SIFPNTKLGFKNFLTVAKQKHGFSLLKILFISLCIL 561


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 275 DAWKTSKNNLHYTYLQFFKS 216
           DAWK   N++H ++  +FK+
Sbjct: 61  DAWKKDPNSVHASWQAYFKN 80


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 80  SQNILYRFVFLSFS*GFWILL 142
           S+N+L+RF+ LSF  G  ++L
Sbjct: 430 SKNVLFRFIQLSFYVGMIVIL 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,754
Number of Sequences: 5004
Number of extensions: 47537
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)