Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1767
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    28   5.6  
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        28   5.6  
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 437 ISFPQ**ISVFQIHYKTSHQSRMTTGYSLVCSIGS 541
           +++P   ++V + H K++ +S +  GY+L C++ S
Sbjct: 191 VTYPINAVNVLKAHGKSARESVLVKGYALNCTVAS 225


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 437 ISFPQ**ISVFQIHYKTSHQSRMTTGYSLVCSIGS 541
           +++P   ++V + H K++ +S +  GY+L C++ S
Sbjct: 191 VTYPINAVNVLKAHGKSARESVLVKGYALNCTVAS 225


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
            R10E8.6 protein.
          Length = 1696

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 385  FLPQCFCRIGQQLL*YNNLISPVVNKCFSNSLQNLTSVTDDYWLLSCMFHWECSEELL 558
            F  Q + +I   LL Y +  S +V    +  L      T+D  LL  +  W C+ ELL
Sbjct: 1168 FFEQPYIKIAASLLSYFDHFS-LVRITLNTPLHGTVIETEDCDLLVSLDQWHCASELL 1224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,265
Number of Sequences: 27780
Number of extensions: 260692
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)