Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1766
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...   132   2e-32
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   1.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   2.6  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   3.4  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   3.4  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   3.4  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   4.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   4.5  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    24   6.0  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    24   7.9  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    24   7.9  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    24   7.9  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.9  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score =  132 bits (318), Expect = 2e-32
 Identities = 54/88 (61%), Positives = 69/88 (78%)
 Frame = +3

Query: 69  LMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAEDARIMSWWD 248
           L++F  H +W T NAYSSP++VL++  NDGS   ++DFREAY W+ +NT  D ++MSWWD
Sbjct: 493 LIMFVYHSSWVTSNAYSSPTVVLSTVLNDGSLMYIDDFREAYDWLRRNTPYDTKVMSWWD 552

Query: 249 YGYHIAGMGNRTTLVDNNTWNNSHIALV 332
           YGY IAGM +R TLVDNNTWNN+HIA V
Sbjct: 553 YGYQIAGMADRITLVDNNTWNNTHIATV 580


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 17  RLGHERALRNAHSLHDPADV 76
           R+GHER +  + SL DP  V
Sbjct: 55  RMGHERKIETSESLDDPLQV 74


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 60  MILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKI 170
           M L +LFS+ C +   N ++   +V   YGN    KI
Sbjct: 1   MGLRLLFSLICVFCISNIFTQAFLVHQIYGNSSFTKI 37


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 45  TLIAFMILLMLFSVHCTWATY 107
           T +AF I L+LF  H TW +Y
Sbjct: 130 TCLAFAIELVLFLPHNTWQSY 150


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 165 KILNDFREAYGWISQNTAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALVV 335
           K L DF  A  W   +T     ++S   YG H+   GN T++V  +  + +H+A ++
Sbjct: 284 KPLADFNVAQEW---STFGSLDLLS---YGVHVYDNGNITSIVAVSGTHGTHVAGII 334


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +3

Query: 114 YSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAEDARIMSWWDYGYHIAGMGNRTTLV 293
           ++S   +LAS GND +  + + F E   +   N     + ++W  +   I   G  T   
Sbjct: 382 WNSNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRGILASGGGTADR 441

Query: 294 DNNTWN 311
               WN
Sbjct: 442 TIKLWN 447


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 130 MLGLE*ALYVAQVQCTE--NNISRIMKAMSVPERTFMPK 20
           ++GL   LY+ ++ C    NN+ R MK + +P+ +  PK
Sbjct: 191 IMGLLFKLYL-RLDCVHLTNNVLRAMKVVELPDISLFPK 228


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 PSIVLASYGNDGSRK 167
           P IVL  YGND S+K
Sbjct: 76  PPIVLGQYGNDPSKK 90


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 57  FMILLMLFS-VHCTWATYNAYS 119
           F+I  + FS +HCTW  YN  S
Sbjct: 216 FLIKWVNFSHLHCTWEPYNNIS 237


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 283  VLLPIPAM*YP*SHQDIIRASSAVFC 206
            +L+ +PAM Y   H D I    +VFC
Sbjct: 1754 LLVSLPAMVYTYEHSDPITFDLSVFC 1779


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 57  FMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFRE---AYGWIS 206
           ++  ++L     +W  YN++ +  ++   YG + +   L +F+    ++ WIS
Sbjct: 343 YLFSVVLSPHQASWNIYNSFDNSMVLWCPYGKNKTLICLLNFQSSLLSFEWIS 395


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +3

Query: 111 AYSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAEDARIMSWWDYGY----HIAGMGN 278
           AY++PS +LASY + G    L+DF   Y +I+ +   +A       Y Y    H  G+ +
Sbjct: 48  AYTTPSTLLASYEHFG---CLDDFLRYY-YIAVSVLIEASDFEALAYEYFSIAHSQGVHH 103

Query: 279 RTTLVDNNTWNNSHIA--LVVEG 341
                D  T  +  I+  +VV G
Sbjct: 104 AEVFFDPQTHTSRGISYDVVVSG 126


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 79  NNISRIMKAMSVPERTFMPKPVS 11
           + ISR    +S PER +  KP+S
Sbjct: 573 SKISRTRLTVSSPERLYCAKPIS 595


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 146 VTGQDDARAGVSVIRGPGAVHREQHQQD 63
           +TG  D   GVS   GP  V R  H+ D
Sbjct: 212 LTGWGDNDRGVSFTFGPDVVSRFLHKHD 239


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 240 WWDYGYHIAGMGNRTTLVDNNTWN 311
           WW+ G    G+ NR     N+T+N
Sbjct: 63  WWEAGAAWNGLLNRYIATGNSTYN 86


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 14  HRLGHERALRNAHSLHDPADVVLCALHLG 100
           H L H   L N  S  +    V C  H+G
Sbjct: 77  HTLSHNLVLDNVSSESNKTSAVFCKRHVG 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,057
Number of Sequences: 5004
Number of extensions: 26875
Number of successful extensions: 87
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)