Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1766
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 146 3e-36
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 63 7e-11
03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934 30 0.45
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 29 1.4
05_07_0230 - 28540114-28540323,28540414-28540548,28540779-285409... 28 2.4
05_01_0175 + 1219120-1219793,1220234-1220267 28 2.4
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 2.4
01_06_0029 + 25751750-25752077,25753501-25753622,25754344-257545... 28 2.4
05_02_0155 + 7146999-7147276,7147447-7147492,7148153-7148284 27 3.2
01_03_0105 + 12604125-12604583 27 3.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 4.2
04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124... 27 4.2
02_04_0304 + 21860661-21860784,21861435-21862044,21862557-218627... 27 4.2
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234... 27 5.6
06_01_0845 - 6430419-6431195 27 5.6
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 26 7.4
06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319... 26 9.8
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 146 bits (355), Expect = 3e-36
Identities = 63/101 (62%), Positives = 75/101 (74%)
Frame = +3
Query: 30 NVRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQ 209
NV L+ LL ++VHCTW T AYSSPSIVLA+ G++G R I +D+REAY W+ Q
Sbjct: 478 NVAIALLLGAFYLLSRYAVHCTWVTSEAYSSPSIVLAARGHNGGRVIFDDYREAYYWLRQ 537
Query: 210 NTAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
NT DA+IMSWWDYGY I MGNRT +VDNNTWNN+HIA V
Sbjct: 538 NTPSDAKIMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATV 578
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 62.9 bits (146), Expect = 7e-11
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +3
Query: 48 LIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAED 224
++ ++L + VHC WA AYS+PSIVL S DG + +DFREAY W+S NT D
Sbjct: 529 ILLLIVLGGFYVVHCVWAAAEAYSAPSIVLTSRSRDGLH-VFDDFREAYAWLSHNTDVD 586
>03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934
Length = 453
Score = 30.3 bits (65), Expect = 0.45
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 105 TWPRCSAQRTTSAGS*RL*AFLSARSCPSRCPHWA 1
+W ++ + G+ RL AFL+AR P PH A
Sbjct: 65 SWTEAQLRKMEAGGNDRLNAFLAARGVPKETPHVA 99
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/55 (21%), Positives = 29/55 (52%)
Frame = +3
Query: 9 ADTGLGMNVRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKIL 173
+ TG + + + + F + ++L + T+ TY + P ++ +S G ++K+L
Sbjct: 360 SSTGFFLYLSLFSSVWFKVYVLLSCAYLTFVTYFSIQPPQLICSSEGGTHAKKVL 414
>05_07_0230 -
28540114-28540323,28540414-28540548,28540779-28540953,
28541104-28541300,28541824-28541945,28542887-28543193
Length = 381
Score = 27.9 bits (59), Expect = 2.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 224 VFCCILRYPSVSFSEV 177
++CC + YP +SFSEV
Sbjct: 290 IYCCDMPYPDLSFSEV 305
>05_01_0175 + 1219120-1219793,1220234-1220267
Length = 235
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 152 IAVTGQDDARAGVSVIRGPGAVHREQHQQDHEGYERS*AHVHAQ 21
+ V DA A V+RG G ++R + E + + A HAQ
Sbjct: 144 VVVEPAADAAATAEVLRGTGVMYRHLAFRPEENFTTADAEAHAQ 187
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 186 EAYGWISQNTAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWN-NSHIALVVEG 341
E G + T E +WW + + G GN+ +W+ ++H + G
Sbjct: 1661 EVIGGGDKGTMEGVMCYTWWGHAEELGGCGNKIAEKWTKSWSTHAHTVATIIG 1713
>01_06_0029 +
25751750-25752077,25753501-25753622,25754344-25754540,
25754641-25754815,25755126-25755260,25755374-25755583
Length = 388
Score = 27.9 bits (59), Expect = 2.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 224 VFCCILRYPSVSFSEV 177
++CC + YP +SFSEV
Sbjct: 297 IYCCDMPYPDLSFSEV 312
>05_02_0155 + 7146999-7147276,7147447-7147492,7148153-7148284
Length = 151
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 122 AGVSVIRGPGAVHREQHQQDHEGYERS*AHV-HAQAGVR 9
A +S +R R Q Q+ EG ERS AH+ HA++G +
Sbjct: 14 AHLSRVRTGAEKKRAQRQRGIEGKERSAAHLSHARSGAK 52
>01_03_0105 + 12604125-12604583
Length = 152
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 106 ITLTPALASSWPVTAMTGH 162
+TL P+LA+ WPV GH
Sbjct: 5 LTLPPSLATLWPVRPQRGH 23
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 155 VIAVTGQDDARAGVSVIRGPGAVHREQHQQDHE 57
++ G R G + G VH+ + QDHE
Sbjct: 163 IVVHDGSSSERPGFYIFTSDGMVHKFDYMQDHE 195
>04_01_0120 +
1241241-1241321,1242827-1242857,1242999-1243612,
1243726-1243796,1244233-1244478,1245267-1245393,
1245993-1246185,1246656-1247209
Length = 638
Score = 27.1 bits (57), Expect = 4.2
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Frame = +3
Query: 12 DTGLGMNVRSGTLIAFM----ILLMLFSVHCTWATYNAYSSPSIVLASYGNDGS------ 161
D G+ + SGT +A I+ +L S+H W+ S+ +Y NDG
Sbjct: 410 DLGIPYHFESGTSMACPHVSGIVAILKSLHPEWSPAALKSAIMTTALTYDNDGMPIQANG 469
Query: 162 --RKILNDFREAYGWISQNTAED 224
+KI + F G+I+ N A D
Sbjct: 470 RVQKIADPFDYGAGFINPNMAAD 492
>02_04_0304 +
21860661-21860784,21861435-21862044,21862557-21862771,
21863072-21863192,21863660-21863772,21863877-21864106,
21864428-21864543,21864675-21864773,21865394-21865639,
21866091-21866190,21866280-21866486,21866584-21866805
Length = 800
Score = 27.1 bits (57), Expect = 4.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 102 TYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAEDARIMSWWDYGYHI 263
T +AY + I L + DG + F EA WI++N D SW D G I
Sbjct: 107 TVSAYDTAWIALVNR-LDGGGERSPQFPEAIDWIARNQLPDG---SWGDAGMFI 156
>11_06_0213 -
21321676-21322069,21322311-21322507,21322818-21323477,
21323522-21323578,21324741-21324848
Length = 471
Score = 26.6 bits (56), Expect = 5.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 281 SVTHSRYVIPVVPPRH 234
S TH+ Y+ P PPRH
Sbjct: 3 SPTHAAYLAPTAPPRH 18
>06_01_0845 - 6430419-6431195
Length = 258
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 346 PSPSTTSAMWELFQVLLSTRVVLLPIPAM*YP*S-HQDIIRASSAV 212
P+P+ SA+ F LS + P+P + ++D+IRASS++
Sbjct: 201 PAPAMLSAVGYAFSPSLSLHPAVAPLPPLVCSEGCYEDVIRASSSL 246
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 117 SSPSIVLASYGNDGSRKILNDF--REAYGWISQNTAEDARIMSWWD 248
SSPS++ ++ + S +++ND R +GW Q ++ + ++ D
Sbjct: 497 SSPSLLASAVPSFSSAEVMNDITERSNFGWTKQQYVKEHQAPTFVD 542
>06_01_0451 +
3194919-3195416,3195560-3195580,3196282-3196467,
3197272-3197556
Length = 329
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 12 DTGLGMNVRSGTLIAFMILLMLFSVHC--TWATYNAYSSPSIVLASYG 149
DTGL R ++ F+ ++LF+V C W Y +V +G
Sbjct: 125 DTGLSR--RCQIVLGFLCFVLLFTVFCLIIWGAARPYEPDVVVKLQFG 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,291,106
Number of Sequences: 37544
Number of extensions: 198684
Number of successful extensions: 496
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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