Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1766
(355 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY074880-1|AAL71884.1| 826|Homo sapiens source of immunodominan... 177 8e-45
AK075380-1|BAC11581.1| 286|Homo sapiens protein ( Homo sapiens ... 167 9e-42
AK027789-1|BAB55370.1| 286|Homo sapiens protein ( Homo sapiens ... 167 9e-42
L38961-1|AAB05994.1| 705|Homo sapiens B5 protein. 142 4e-34
BT007100-1|AAP35764.1| 705|Homo sapiens integral membrane prote... 141 5e-34
BC048348-1|AAH48348.2| 705|Homo sapiens STT3, subunit of the ol... 141 5e-34
BC020965-1|AAH20965.1| 705|Homo sapiens STT3, subunit of the ol... 141 5e-34
L47337-1|AAL77539.1| 705|Homo sapiens transmembrane protein pro... 138 3e-33
BC015880-1|AAH15880.1| 225|Homo sapiens STT3B protein protein. 76 3e-14
DQ060036-1|AAY43130.1| 900|Homo sapiens polymerase (DNA directe... 29 3.1
AY136549-1|AAN52116.1| 900|Homo sapiens DNA polymerase N protein. 29 3.1
AL158068-2|CAM20461.1| 900|Homo sapiens polymerase (DNA directe... 29 3.1
AL136360-1|CAM16854.1| 900|Homo sapiens polymerase (DNA directe... 29 3.1
>AY074880-1|AAL71884.1| 826|Homo sapiens source of immunodominant
MHC-associated peptides protein.
Length = 826
Score = 177 bits (431), Expect = 8e-45
Identities = 76/107 (71%), Positives = 90/107 (84%)
Frame = +3
Query: 12 DTGLGMNVRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREA 191
+ GLG N++S + ++LLM+F+VHCTW T NAYSSPS+VLASY +DG+R IL+DFREA
Sbjct: 528 EEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREA 587
Query: 192 YGWISQNTAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
Y W+ QNT E AR+MSWWDYGY IAGM NRTTLVDNNTWNNSHIALV
Sbjct: 588 YFWLRQNTDEHARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALV 634
>AK075380-1|BAC11581.1| 286|Homo sapiens protein ( Homo sapiens
cDNA PSEC0070 fis, clone NT2RP2001508, highly similar to
Source of immunodominant MHC-associated peptides. ).
Length = 286
Score = 167 bits (406), Expect = 9e-42
Identities = 71/91 (78%), Positives = 81/91 (89%)
Frame = +3
Query: 60 MILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAEDARIMS 239
++LLM+F+VHCTW T NAYSSPS+VLASY +DG+R IL+DFREAY W+ QNT E AR+MS
Sbjct: 4 LMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMS 63
Query: 240 WWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
WWDYGY IAGM NRTTLVDNNTWNNSHIALV
Sbjct: 64 WWDYGYQIAGMANRTTLVDNNTWNNSHIALV 94
>AK027789-1|BAB55370.1| 286|Homo sapiens protein ( Homo sapiens
cDNA FLJ14883 fis, clone PLACE1003596, moderately
similar to OLIGOSACCHARYL TRANSFERASE STT3 SUBUNIT. ).
Length = 286
Score = 167 bits (406), Expect = 9e-42
Identities = 71/91 (78%), Positives = 81/91 (89%)
Frame = +3
Query: 60 MILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQNTAEDARIMS 239
++LLM+F+VHCTW T NAYSSPS+VLASY +DG+R IL+DFREAY W+ QNT E AR+MS
Sbjct: 4 LMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMS 63
Query: 240 WWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
WWDYGY IAGM NRTTLVDNNTWNNSHIALV
Sbjct: 64 WWDYGYQIAGMANRTTLVDNNTWNNSHIALV 94
>L38961-1|AAB05994.1| 705|Homo sapiens B5 protein.
Length = 705
Score = 142 bits (343), Expect = 4e-34
Identities = 60/102 (58%), Positives = 74/102 (72%)
Frame = +3
Query: 27 MNVRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWIS 206
+ V SG ++ L+ ++ H TW T AYSSPSIVL++ G DGSR I +DFREAY W+
Sbjct: 454 IEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLR 513
Query: 207 QNTAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
NT EDA++MSWWDYGY I M NRT LVDNNTWNN+HI+ V
Sbjct: 514 HNTPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRV 555
>BT007100-1|AAP35764.1| 705|Homo sapiens integral membrane protein
1 protein.
Length = 705
Score = 141 bits (342), Expect = 5e-34
Identities = 60/100 (60%), Positives = 73/100 (73%)
Frame = +3
Query: 33 VRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQN 212
V SG ++ L+ ++ H TW T AYSSPSIVL++ G DGSR I +DFREAY W+ N
Sbjct: 456 VASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHN 515
Query: 213 TAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
T EDA++MSWWDYGY I M NRT LVDNNTWNN+HI+ V
Sbjct: 516 TPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRV 555
>BC048348-1|AAH48348.2| 705|Homo sapiens STT3, subunit of the
oligosaccharyltransferase complex, homolog A (S.
cerevisia protein.
Length = 705
Score = 141 bits (342), Expect = 5e-34
Identities = 60/100 (60%), Positives = 73/100 (73%)
Frame = +3
Query: 33 VRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQN 212
V SG ++ L+ ++ H TW T AYSSPSIVL++ G DGSR I +DFREAY W+ N
Sbjct: 456 VASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHN 515
Query: 213 TAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
T EDA++MSWWDYGY I M NRT LVDNNTWNN+HI+ V
Sbjct: 516 TPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRV 555
>BC020965-1|AAH20965.1| 705|Homo sapiens STT3, subunit of the
oligosaccharyltransferase complex, homolog A (S.
cerevisia protein.
Length = 705
Score = 141 bits (342), Expect = 5e-34
Identities = 60/100 (60%), Positives = 73/100 (73%)
Frame = +3
Query: 33 VRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQN 212
V SG ++ L+ ++ H TW T AYSSPSIVL++ G DGSR I +DFREAY W+ N
Sbjct: 456 VASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHN 515
Query: 213 TAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
T EDA++MSWWDYGY I M NRT LVDNNTWNN+HI+ V
Sbjct: 516 TPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRV 555
>L47337-1|AAL77539.1| 705|Homo sapiens transmembrane protein
protein.
Length = 705
Score = 138 bits (335), Expect = 3e-33
Identities = 59/100 (59%), Positives = 72/100 (72%)
Frame = +3
Query: 33 VRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREAYGWISQN 212
V SG ++ L+ ++ H TW T AYSSPSIVL++ DGSR I +DFREAY W+ N
Sbjct: 456 VASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARDGDGSRIIFDDFREAYYWLRHN 515
Query: 213 TAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
T EDA++MSWWDYGY I M NRT LVDNNTWNN+HI+ V
Sbjct: 516 TPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRV 555
>BC015880-1|AAH15880.1| 225|Homo sapiens STT3B protein protein.
Length = 225
Score = 76.2 bits (179), Expect = 3e-14
Identities = 31/33 (93%), Positives = 31/33 (93%)
Frame = +3
Query: 234 MSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
MSWWDYGY IAGM NRTTLVDNNTWNNSHIALV
Sbjct: 1 MSWWDYGYQIAGMANRTTLVDNNTWNNSHIALV 33
>DQ060036-1|AAY43130.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 63 ILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDF 182
+L C +NA IVL +GNDGS K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AY136549-1|AAN52116.1| 900|Homo sapiens DNA polymerase N protein.
Length = 900
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 63 ILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDF 182
+L C +NA IVL +GNDGS K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AL158068-2|CAM20461.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 63 ILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDF 182
+L C +NA IVL +GNDGS K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
>AL136360-1|CAM16854.1| 900|Homo sapiens polymerase (DNA directed)
nu protein.
Length = 900
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 63 ILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDF 182
+L C +NA IVL +GNDGS K + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,708,431
Number of Sequences: 237096
Number of extensions: 1103536
Number of successful extensions: 6009
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6009
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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