Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1766
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical p...   157   2e-39
Z36238-9|CAL63998.1|  335|Caenorhabditis elegans Hypothetical pr...    33   0.076
AF443191-1|AAL60201.1|  285|Caenorhabditis elegans X-box binding...    33   0.076
Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   5.0  
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z78413-4|CAB01664.1|  329|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    26   6.6  
Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical p...    26   8.7  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    26   8.7  
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical
           protein T12A2.2 protein.
          Length = 757

 Score =  157 bits (382), Expect = 2e-39
 Identities = 69/107 (64%), Positives = 85/107 (79%)
 Frame = +3

Query: 12  DTGLGMNVRSGTLIAFMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILNDFREA 191
           ++G+  NVR+   I  +I L++F VH T+ T NAYS PS+VL S  N+G R I++DFREA
Sbjct: 471 ESGVSSNVRTIISIILVIFLLMFVVHATYVTSNAYSHPSVVLQSSTNNGDRIIMDDFREA 530

Query: 192 YGWISQNTAEDARIMSWWDYGYHIAGMGNRTTLVDNNTWNNSHIALV 332
           Y W+ +NTA+DAR+MSWWDYGY IAGM NRTTLVDNNTWNNSHIALV
Sbjct: 531 YHWLRENTADDARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALV 577


>Z36238-9|CAL63998.1|  335|Caenorhabditis elegans Hypothetical
           protein R74.3a protein.
          Length = 335

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 203 YPSVSFSEVI*DFT*PVIAVTGQDDARAGVSVIRGPGAVHREQHQQDHEGY 51
           Y +V + E +     PV+ V G+D      +V  GP  +H++QHQQ    Y
Sbjct: 144 YQNVVYEEEVVGEVAPVVVVGGEDRRAFESAVGTGPIHLHQQQHQQPTPSY 194


>AF443191-1|AAL60201.1|  285|Caenorhabditis elegans X-box binding
           protein processedisoform protein.
          Length = 285

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 203 YPSVSFSEVI*DFT*PVIAVTGQDDARAGVSVIRGPGAVHREQHQQDHEGY 51
           Y +V + E +     PV+ V G+D      +V  GP  +H++QHQQ    Y
Sbjct: 144 YQNVVYEEEVVGEVAPVVVVGGEDRRAFESAVGTGPIHLHQQQHQQPTPSY 194


>Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical
           protein T12G3.2c protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 57  FMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGS-RKILNDFREAYGWISQNTAEDARI 233
           F I   +FS    +AT +  S P  +      D   +++++ +     W+     +D  +
Sbjct: 452 FHIKATMFSPSGRFATAHTLSLPFTIATRRNQDCQVQRMMSSYTATIFWLYGCNTQDGLL 511

Query: 234 MSWWDYGYH 260
           + W D G H
Sbjct: 512 LQWIDGGMH 520


>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical
           protein T12G3.2b protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 57  FMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGS-RKILNDFREAYGWISQNTAEDARI 233
           F I   +FS    +AT +  S P  +      D   +++++ +     W+     +D  +
Sbjct: 452 FHIKATMFSPSGRFATAHTLSLPFTIATRRNQDCQVQRMMSSYTATIFWLYGCNTQDGLL 511

Query: 234 MSWWDYGYH 260
           + W D G H
Sbjct: 512 LQWIDGGMH 520


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical
           protein T12G3.2a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 57  FMILLMLFSVHCTWATYNAYSSPSIVLASYGNDGS-RKILNDFREAYGWISQNTAEDARI 233
           F I   +FS    +AT +  S P  +      D   +++++ +     W+     +D  +
Sbjct: 452 FHIKATMFSPSGRFATAHTLSLPFTIATRRNQDCQVQRMMSSYTATIFWLYGCNTQDGLL 511

Query: 234 MSWWDYGYH 260
           + W D G H
Sbjct: 512 LQWIDGGMH 520


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 78   FSVHCTWATYNAYSSPSIVLASYGNDGSRKILN 176
            F+V C W + N Y + ++     GN+G + +L+
Sbjct: 2032 FNVICNWTSGNTYFNMTVGNMLKGNEGKKLLLD 2064


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 191 LRMDIAEYSRRRTDYVLVGLRVSHS 265
           L+MD+ +Y + R ++V +G  V H+
Sbjct: 42  LKMDVDKYKKNREEFVKIGKCVGHA 66


>Z78413-4|CAB01664.1|  329|Caenorhabditis elegans Hypothetical
           protein T01C3.4 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 93  TWATYNAYSSPSIVLASYGNDGS 161
           +W   N YSS   V A YG  GS
Sbjct: 32  SWLIANGYSSYDFVRADYGTQGS 54


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 85   TENNISRIMKAMSVPERTFMPKPVS 11
            T +N+S I    SVP R F  +PVS
Sbjct: 1202 THSNMSSIQSTTSVPGRRFTVQPVS 1226


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 85   TENNISRIMKAMSVPERTFMPKPVS 11
            T +N+S I    SVP R F  +PVS
Sbjct: 1202 THSNMSSIQSTTSVPGRRFTVQPVS 1226


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 48  LIAFMILLMLFSVHCTWATYNAYSSPSIVLAS--YGNDGSRKILNDFREAYGWISQNTA 218
           +IA+ I   LF+ H       +  S S +L+   + N  + K    FR  YGWIS + A
Sbjct: 613 MIAYNIGQRLFAKHVMNQVVKSQGSLSELLSKPRHWNKLTDKGREAFRRIYGWISDDEA 671


>Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical
           protein Y57G11C.12b protein.
          Length = 131

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 240 WWDYGYHIAGMGNRTTLVDNNTWNNSHI 323
           WWD+G H   +G    ++      N H+
Sbjct: 49  WWDFGLHDMPLGVFRAVIKKQFTKNGHL 76


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 14  HRLGHERALRNAHSLHDPADVVLCAL 91
           H+L HE A   + S H    +VLC L
Sbjct: 30  HKLRHEAATAQSSSKHKHVSLVLCLL 55


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 146 VTGQDDARAGVSVIRGPGAVHREQHQQDHE 57
           VT   D     S+++G     R QHQQ H+
Sbjct: 50  VTLPSDPIVAESLLKGGSLTRRHQHQQQHQ 79


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 146 VTGQDDARAGVSVIRGPGAVHREQHQQDHE 57
           VT   D     S+++G     R QHQQ H+
Sbjct: 50  VTLPSDPIVAESLLKGGSLTRRHQHQQQHQ 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,066
Number of Sequences: 27780
Number of extensions: 155237
Number of successful extensions: 488
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)