Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1766
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   7.5  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              20   9.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              20   9.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 273 GNRTTLVDNNTWNNSHIAL 329
           GN + L  NNT NNS + +
Sbjct: 721 GNVSYLTTNNTSNNSQLQI 739


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 254 PVVPPRHNPCVFCCILRYPSVSFSEVI 174
           P+ PP+ NP +F  +  Y S + + VI
Sbjct: 819 PMQPPQQNPYMFLPV-SYMSTTMAGVI 844


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 179 LPRSLRMDIAEYSRRR 226
           LPR +R  I EY   R
Sbjct: 404 LPREMRQRITEYFEHR 419


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 260 VIPVVPPRHNPCVFCCILRYPSVSFS 183
           ++ V   RH     CC   YP + F+
Sbjct: 203 ILGVPAERHKKYYPCCDEPYPDIFFN 228


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 179 LPRSLRMDIAEYSRRR 226
           LPR +R  I EY   R
Sbjct: 372 LPREMRQRITEYFEHR 387


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 44  NAHSLHDPADVVLCALHL 97
           N   LH PAD+V+ A ++
Sbjct: 521 NLTKLHPPADLVVYACNV 538


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = +3

Query: 72  MLFSVHCTWATYNAYSSPSIVLASYGNDGSRKILND 179
           +L  + CT   +N     +       +D  R +LND
Sbjct: 59  VLLFIECTMKKFNVVDENANFNEKISSDIVRAVLND 94


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 246 DYGYHIAGMGNRTTLVDNNTWNNSHIALVVEG 341
           +YG  +A +  +T +++ +  +  +IA ++EG
Sbjct: 67  NYGCFLACIWQQTGVMNGSELSTYNIAGIIEG 98


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 260 VIPVVPPRHNPCVFCCILRYPSVSFS 183
           +I V   R+     CC   YP + F+
Sbjct: 204 IIKVPAVRNEAFYICCEEPYPDIVFN 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,128
Number of Sequences: 438
Number of extensions: 1926
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)