Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1764
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   0.99 
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   0.99 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   3.0  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   5.3  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    24   7.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   9.3  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 107 LNNSSALVYFKFNI*YPYFHCY 42
           ++N   ++YF FN+ +P F CY
Sbjct: 564 IDNIWTVIYFIFNVPFPVFLCY 585


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 248 LFGR*LRVLCWVGVIVTFTLPFPILLRIYTLSMFITVEHKTLVRTLYLNNSSALVYFKFN 69
           LF R L+ L    ++    L   +  R  T ++  +V ++TLV T+   +S++    K N
Sbjct: 10  LFKRYLQRLFITRILTLIRLDLSLFRRYNTNTIVGSVAYETLVDTVCDVSSNSTFVVKCN 69

Query: 68  I*YPYFHCYK 39
             YP   C K
Sbjct: 70  RQYPCTRCLK 79


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 311 MSKRSSSLFRVGSVPASSRSLWV 379
           M K S S+FR GS+  +++  W+
Sbjct: 633 MQKHSGSVFRCGSIAYAAQQPWI 655


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 218 WVGVIVTFTLPFPILLRIYTLSMFITVEHKTLVRTLYL 105
           W+G    F + FP+L    TL++F T + +T++   ++
Sbjct: 249 WIGRTTGFEISFPLLNDKETLTVF-TTKPETIIDVSFI 285


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 159 RIYSQQYREGKRESDDHTYPAQDPQSPTEEA 251
           ++ +++    KR+SD+ + P+Q  Q   E A
Sbjct: 266 KVVTKETASSKRKSDEESLPSQKKQKKVEVA 296


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 289  VQEGRKSNVKTILKSVSGRLRSGELTV 369
            +++GR+S   ++     G L+SGE+TV
Sbjct: 1573 LEQGRESKKVSVASYKFGDLKSGEVTV 1599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,463
Number of Sequences: 5004
Number of extensions: 30992
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)