Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1764
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 2   LSDFNNT-QM*RLFYNSENKDIK 67
           L  FNN  +   +FYN+ N DIK
Sbjct: 517 LKAFNNVPKKLNMFYNNFNSDIK 539


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 205 ITPTQHKTLSHLPKRQPVDLAFTDLTYKVQEGRKSNVKTILKSV 336
           +TP     +S +P   P+DLA       +   RK   K IL+S+
Sbjct: 435 LTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRK-RCKMILESM 477


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 2   LSDFNNT-QM*RLFYNSENKDIK 67
           L  FNN  +   +FYN+ N DIK
Sbjct: 517 LKAFNNVPKKLNMFYNNFNSDIK 539


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 218 WVGVIVTFTLPFPILLRIYTLSMFITV 138
           W G +V FT  FP  L    L   +T+
Sbjct: 230 WTGKVVYFTSLFPYALLTILLIRGLTL 256


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 218 WVGVIVTFTLPFPILLRIYTLSMFITV 138
           W G +V FT  FP  L    L   +T+
Sbjct: 283 WTGKVVYFTSLFPYALLTILLIRGLTL 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,893
Number of Sequences: 438
Number of extensions: 2100
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)