Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1763
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 202 2e-53
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 194 9e-51
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 102 4e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 93 3e-20
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 4.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 5.3
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.3
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 7.0
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 7.0
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 9.3
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.3
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 25 9.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 202 bits (494), Expect = 2e-53
Identities = 90/128 (70%), Positives = 106/128 (82%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 256
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 257 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVFG 436
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEV-T 119
Query: 437 QESRKLAD 460
+ R++AD
Sbjct: 120 DKIRRIAD 127
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 474 GLQGFLIFHSF 506
GLQGFL+FHSF
Sbjct: 131 GLQGFLVFHSF 141
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 194 bits (472), Expect = 9e-51
Identities = 90/133 (67%), Positives = 107/133 (80%), Gaps = 5/133 (3%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 241
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 242 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 421
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 422 DLVFGQESRKLAD 460
D V + R++AD
Sbjct: 120 DSVL-ERIRRMAD 131
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 474 GLQGFLIFHSF 506
GLQGFL+FHSF
Sbjct: 135 GLQGFLVFHSF 145
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 102 bits (244), Expect = 4e-23
Identities = 49/118 (41%), Positives = 67/118 (56%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 256
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 257 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 430
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D V
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 92.7 bits (220), Expect = 3e-20
Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 5/122 (4%)
Frame = +2
Query: 80 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 259
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 260 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGH---YTIGKEIVD 424
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G+ I ++I+D
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFEDIMD 120
Query: 425 LV 430
++
Sbjct: 121 MI 122
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 488 ESLQTRVTLGQRACGILVQKPNLRFPFQWCSDHG 387
E Q + LG CG Q P + W S +G
Sbjct: 39 EQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNG 72
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 156 STASSLMARCPQTRPSGVETILSTLSSARPELAST 260
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 310 PHWHIQTVVSSRTTYYW*GRCCQQLCPWSLHHWK 411
P+W+ Q + S Y+ C L PWS W+
Sbjct: 216 PNWYQQVLTKSDMIEYYDISGCYILKPWSYSIWE 249
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 175 WPDAHRQDHRGWRRFFQHFLQR 240
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 423 IWFLDKNPASSLTQCYPGLQGFLIFH 500
+WFL ++ T+ Y G++G FH
Sbjct: 1074 LWFLKLTNLATFTRQYAGIRGLPYFH 1099
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 66 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 188
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 373 SIFLTSNKLFWMKQLSVCASADLINNSRF 287
S+F+T +K+FW + L + S+ +++ +F
Sbjct: 283 SLFITIHKIFWRQILGMGVSSFMVSVCQF 311
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 130 ITDLDSGLANVYRDALTHFDLSF 62
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 184 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 62
H I+ D L + K + +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 362 KEDAANNYARGHYTIGKEIVDLV 430
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 527 PEPVPPPKGVEDQ 489
P P PPP VEDQ
Sbjct: 190 PPPPPPPPAVEDQ 202
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 530 TPEPVPPPKGVEDQESLQTRVTLGQRACGILVQK 429
T P PP ++D++S +L + ILVQK
Sbjct: 97 TENPKPPKAIIKDEQSQSKTKSLDEADVEILVQK 130
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 353 ITGKEDAANNYARGHYTIGKEIVDLVFG 436
IT + NN GH T+G + V L G
Sbjct: 883 ITDFSRSVNNQRNGHLTVGSDAVCLSLG 910
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,286
Number of Sequences: 5004
Number of extensions: 48023
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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