Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1763
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.4  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   4.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 528 PRAGTSTERSGRSGILADPGNTGSAS 451
           P   +  E+ G + + A+PG+TG+ +
Sbjct: 158 PHDASEKEQLGLASVKAEPGSTGTTT 183


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 429 FLDKNPASSLTQCYPGL 479
           FL+K P + + + YPG+
Sbjct: 151 FLEKGPVALINELYPGV 167


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 140 PSRHYRSGLR 111
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 203 RWSCLWASGHQAGCRAPGSKAPSRHYR 123
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 203 RWSCLWASGHQAGCRAPGSKAPSRHYR 123
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 203 RWSCLWASGHQAGCRAPGSKAPSRHYR 123
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 530  TPEPVPPPKGVEDQES 483
            +PEP PPP    DQ +
Sbjct: 1856 SPEPPPPPPRNHDQNN 1871


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 174 MARCPQTRPSGVETILSTLSSARPE 248
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 239 ETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 334
           E  A  H+    + D+EPTV         RQL
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,783
Number of Sequences: 438
Number of extensions: 3766
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)