Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1762
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 150 1e-37
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 4e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 65 5e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 64 9e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 50 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 40 2e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 9e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.003
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.005
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 0.92
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 26 2.8
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.7
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 26 3.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 6.5
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 6.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 8.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.5
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 8.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 150 bits (364), Expect = 1e-37
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGWILASLSTFQQMWISKQ 292
GGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGG ILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 291 EYDESGPSIVHRKCF 247
EYDESGP IV+RKCF
Sbjct: 361 EYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.9 bits (161), Expect = 4e-13
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGWILASLSTFQQMWI 301
GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GG IL+SL TF Q+WI
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 300 SKQEYDESGP---SIVHRKC 250
S+QEY+E G +++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 65.3 bits (152), Expect = 5e-12
Identities = 29/75 (38%), Positives = 51/75 (68%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGWILASLSTFQQMWISKQ 292
GG+T+ G +R E+ A++ ++KI A PER ++ W+GG ILASLSTF+++ I+ +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 291 EYDESGPSIVHRKCF 247
EY ++ +++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 64.5 bits (150), Expect = 9e-12
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGWILASLSTFQQMWIS 298
GGT++ PG+++R+Q E+ LA S + + +VW GG ILASL FQ +W+S
Sbjct: 351 GGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVS 410
Query: 297 KQEYDESG 274
KQEYDE G
Sbjct: 411 KQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 50.0 bits (114), Expect = 2e-07
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 12/78 (15%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGWILAS- 328
GG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG +LA
Sbjct: 301 GGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADI 360
Query: 327 LSTFQQMWISKQEYDESG 274
++ MW+SK E++E G
Sbjct: 361 MAQNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGWILASLSTFQQMWISKQ 292
GG +PG R+ E+ +LAP+ ++K+ P + W + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 291 EYDESGPSIVHRK 253
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.9 bits (84), Expect = 9e-04
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGWILASLSTFQQMWISKQ 292
GG PG+ R+++E+T++ P I + W G + F+ ++++
Sbjct: 642 GGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTRE 701
Query: 291 EYDESGPSIV 262
EY E GP +
Sbjct: 702 EYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGWILASLSTFQQMWI 301
GG +PG A +++ I + + I +I PP + ++ W G I + ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 300 SKQEYDESGPSIVHRK 253
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Frame = -1
Query: 471 GGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGGWIL 334
GG+T++ +R+Q+++ + + + +I+ ++ +VW GG +L
Sbjct: 334 GGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLL 393
Query: 333 ASLSTFQQMWISKQEYDESGPSIVHR 256
A F +K +Y+E G SI R
Sbjct: 394 AQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 0.92
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 368 GSTPYGSVDGSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTASQLPPAAR 210
GST + D P+LP +R S R+T S A Y +S + + PP +R
Sbjct: 21 GSTNWAD-DIDDLPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESR 72
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 2.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 365 STPYGSVDGSS-PPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTASQLPPAARGRL 201
++P + D S P + NR R S TSL A+ ++ ++LPP G L
Sbjct: 355 ASPGSNFDNMSISPKVAVNRYIHRGPSATSLNKFSMISDAASKSRAKLPPLTSGSL 410
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 2.8
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 361 LRMDRWMDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNAPRVS 227
L M R +D + + +P D+ G R + H + EV+LN PRVS
Sbjct: 36 LVMTRMLDGKTEV-IPLTTDVHNGFWR-FGRHKSCEVVLNGPRVS 78
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 362 TPYGSVDGSSPPSLPSNRCGSRNRSTTSLAPP 267
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 332 PPSLPSNRCGSRNRSTTSLAPPLYTGSASK-RTASQLPP 219
PP L N+ S + T PP G S+ A +LPP
Sbjct: 25 PPVLDMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPP 63
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -3
Query: 481 VLSGWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWMDPRLPLYLPTDVD 302
VL WY PW + KG+ + +E + SSR + + W+D YL +++D
Sbjct: 480 VLGRWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEID 530
Query: 301 LETGV 287
+ + V
Sbjct: 531 MVSAV 535
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 356 YGSVDGSSPPSLPSNRCG--SRNRSTTSLAP 270
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 356 YGSVDGSSPPSLPSNRCG--SRNRSTTSLAP 270
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 354 WIGGWILASLSTFQQM---WISKQEYDESGPSIVHRK 253
++GG I+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 338 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTASQLPPAAR 210
++PP P N ++S S P T ++ + PP+AR
Sbjct: 362 ATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPPSAR 404
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 323 LPSNRCGSRNRSTTSLAPPLYTGSASKRTASQLPPAARGRLLN 195
+P + STT + PPL T S+S + +P ++ +LN
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS----TPIPSSSSSGVLN 69
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 327 LSTFQQMWISKQEYDESGPSIV 262
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 373 WRSNDLNLHCRWGESCD 423
+RS ++ L CRWG S D
Sbjct: 380 YRSPEVILGCRWGASAD 396
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 429 KEITALAPSTMKIKIIAPPERKYSVWIGGWILASLST 319
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 365 STPYGSVDGSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASK 243
S YG+ GS PP+ PS + ++ S P Y G +++
Sbjct: 109 SYTYGNNFGSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 295 FRDPHLLEGREGGEDPSTDPYGVLPLWRS 381
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,627
Number of Sequences: 5004
Number of extensions: 39487
Number of successful extensions: 155
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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