Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1761
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   187   7e-49
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   177   6e-46
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    97   7e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    87   1e-18
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   3.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   8.4  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  187 bits (455), Expect = 7e-49
 Identities = 79/114 (69%), Positives = 94/114 (82%)
 Frame = +2

Query: 77  MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDNTIGGGDDSFNTFLNETGTGK 256
           MRE I +HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TF +ETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 257 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPKHLITGKEDAANNYARGHYTIGKEI 418
           +VPR+++VDLEP V+D+VRTG YR LFHP+ LITGKEDA+NNYARGHYT+GKE+
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  177 bits (431), Expect = 6e-46
 Identities = 80/119 (67%), Positives = 96/119 (80%), Gaps = 5/119 (4%)
 Frame = +2

Query: 77  MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDNTIGGGD-----DSFNTFLNE 241
           MRE I VHVGQAGVQIGNACWELYCLEHGI PDG  PT+N+    +     D F TF +E
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 242 TGTGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPKHLITGKEDAANNYARGHYTIGKEI 418
           TG GK VPR+++VDLEP V+D+VRTG Y+ LFHP+ ++TGKEDA+NNYARGHYT+GKE+
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 97.5 bits (232), Expect = 7e-22
 Identities = 47/114 (41%), Positives = 64/114 (56%)
 Frame = +2

Query: 77  MRECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDNTIGGGDDSFNTFLNETGTGK 256
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N + NE   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 257 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPKHLITGKEDAANNYARGHYTIGKEI 418
           +VPRAV VDLEP  +D V++G +  LF P ++I G+  A N +A+GHYT G E+
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 87.0 bits (206), Expect = 1e-18
 Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
 Frame = +2

Query: 80  RECIFVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDNTIGGGDDSFNTFLNETGTGKH 259
           RE I +  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + F  ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 260 VPRAVFVDLEPTVVDEVRTGTYRQLFHPKHLITGKE--DAANNYARGH 397
           +PRA+ +DLEP VV+ + + TY  L++P++++  K    A NN+A G+
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 66  LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 188
           L+S        +L+ P SR++ P  S +  STASSL    P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 144 FTAWSTASSLMARCPQTIPSGVETILSTLS 233
           FT  +  S L     Q+IPS V+ ++ TLS
Sbjct: 616 FTKGAPESILAISSQQSIPSNVQEVIHTLS 645


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 63  KLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTIPS 203
           K KSKC+ A++  L K +S   +  G ++  ST  ++      TI S
Sbjct: 291 KTKSKCIKAAIEALKKEKS---VVIGMYSIISTTYAISDNTNPTIES 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,243
Number of Sequences: 5004
Number of extensions: 36846
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)