Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1760
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    32   0.063
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   1.8  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   3.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   7.2  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   7.2  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   7.2  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   9.5  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    25   9.5  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   9.5  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    25   9.5  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 543 KLFLMSWGPDTAKVKKKMLYS 481
           K+  +SW PD A +K KM+YS
Sbjct: 80  KIIFISWSPDVAPIKSKMVYS 100


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 476 SFDALKKSLVGVQKYIQATDLSEASQ 399
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 390 LKEAPRHRLPINSIYTRALRRNRTRF 313
           L E PRHRLP  ++ T  L  + T F
Sbjct: 330 LVECPRHRLPKLNVKTGLLENSYTEF 355


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 479 GSFDALKKSLVGVQKYIQATDLSEASQEAV*KKLRATDCQ*TAFTHELCDETEPAFRHS 303
           GSF A+++       +  +  +S A  ++    L  +       T E+ DE  P+F HS
Sbjct: 57  GSFPAIRQPTESSTHFQSSHSVSNAHNQS---PLNQSQSSANPVTFEIADEPSPSFNHS 112


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 222 SIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVAELVCKCCLL 362
           +++  L  FLC++T  +  SW      G      G V+ +V  C +L
Sbjct: 478 TVLFCLHTFLCDSTVLMTWSWDGYPIKGPQPYPHGAVSIVVSICAVL 524


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 156 CREA-VMRFGLKGGAAVVTIWVAHLCC 79
           CR A  +R G+K G  ++ I V  +CC
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCC 33


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -3

Query: 472 STL*KSPLSEFRSTSKRPTFRKRLRRPFKRSSAPPIANKQHLHTSSATK 326
           S+  +SP S           RK  RRP   SS PPI +  H  TSS T+
Sbjct: 162 SSFRRSPPSSVHMKPSAFNGRKVSRRP--SSSPPPIPSIPHETTSSDTQ 208


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 540 LFLMSWGPDTAKVKKKMLYS 481
           L L+S+ P+ A V++KMLY+
Sbjct: 81  LQLISYVPENANVRRKMLYA 100


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 182 YPRGLTRGPTTSKINHINTIRFPL**Y*AASGVV 283
           YP  LT   TT K  H  +IRF    Y  ASG+V
Sbjct: 14  YPEALT---TTLKHGHATSIRFSTNGYHLASGLV 44


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -3

Query: 457 SPLSEFRSTSKRPTFRKRLRRPFKRSSAPPIANKQHL--HTSSATKPNPLSDTPALTTRG 284
           SP+ E    +++PT RK+   P K++ +     K++     +S+++   +   P  T R 
Sbjct: 287 SPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEAVKSLPE-TQR- 344

Query: 283 HDTTSRL 263
             TTSR+
Sbjct: 345 --TTSRI 349


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 288 RVVRAGVSESGFGFVAELVCKCCLLAIGGAELLLNGLLRRFRKVGRLDVLLNS 446
           RVV    +  G G+  E +   CL A     L L G+      +G +DVL  S
Sbjct: 83  RVVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNEDIG-VDVLRTS 134


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 280 RGRVSSGQECRKAGSVSSQSS 342
           +GR +S QE   +GS++SQSS
Sbjct: 70  KGRKTSRQELLNSGSLNSQSS 90


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 427 KRPTFRKRLRRPFKRSSAPPIANKQHLHTSSATKPN 320
           K    RKR + P   SSA  +  K  L+T    + N
Sbjct: 133 KHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQN 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,773
Number of Sequences: 5004
Number of extensions: 46960
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)