Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1760
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical...    29   1.6  
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   3.8  
AC006677-7|AAF39944.1|  281|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z83103-1|CAB05474.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
 Frame = -3

Query: 430 SKRPTFRKRLRRPFKRSSAPPIANKQHLHTSSATKPNPL-SDTPALT-----TRGHDTTS 269
           SK+ +FR             P+++  +   S   KP+P+  +TP  T     T  + TT+
Sbjct: 127 SKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKNTPRTTSSSSKTTINTTTT 186

Query: 268 RLVLLQRKTNSIN--MIDFTGGRTSCESARVGTTAP 167
           R+    R+  S+   + DFT   ++  S R G T P
Sbjct: 187 RIPSTPRRITSVPGLITDFTPSFSTFGSDRPGATPP 222


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
 Frame = -3

Query: 430 SKRPTFRKRLRRPFKRSSAPPIANKQHLHTSSATKPNPL-SDTPALT-----TRGHDTTS 269
           SK+ +FR             P+++  +   S   KP+P+  +TP  T     T  + TT+
Sbjct: 127 SKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKNTPRTTSSSSKTTINTTTT 186

Query: 268 RLVLLQRKTNSIN--MIDFTGGRTSCESARVGTTAP 167
           R+    R+  S+   + DFT   ++  S R G T P
Sbjct: 187 RIPSTPRRITSVPGLITDFTPSFSTFGSDRPGATPP 222


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 460 KSPLSEFRSTSKRPTFRKRLRRPFKRSSAP-PIANKQHLHTSSATKPNPLSDTPALTTRG 284
           KSP +   STS   T  +RL +P++ +  P P  +     TS++T  +  + T   T+  
Sbjct: 61  KSPTTTSISTSTVSTTPERLTKPYEETDTPIPTHSSPSTSTSTSTSTSTSTSTSRSTSTV 120

Query: 283 HDTT 272
             TT
Sbjct: 121 TPTT 124


>AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical
           protein C34B2.9 protein.
          Length = 213

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 400 RRPFKRSSAPPIANKQHLHTSSATKPNPLSDTPALTTRGHDTT 272
           RRP   S+ PP ++   LH SS+T P P    P L T  H  +
Sbjct: 107 RRPIISSNNPPSSSPVPLHVSSSTIPPP--PLPPLPTTLHSNS 147


>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 382 SSAPPIANKQHLHTSSATKPNPLSDTPALTTRGHDTTS 269
           SS   + +  +  TS   +P P+SD P L T  H TT+
Sbjct: 769 SSIDSLESINNQETSKFPRPLPMSDQPTLNTSCHITTT 806


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 382 SSAPPIANKQHLHTSSATKPNPLSDTPALTTRGHDTTS 269
           SS   + +  +  TS   +P P+SD P L T  H TT+
Sbjct: 769 SSIDSLESINNQETSKFPRPLPMSDQPTLNTSCHITTT 806


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 439 RSTSKRPTFRKRLRRPFKRSSAPPIANKQHLHTSSATKPNPLSDTPALTTRGHDTTSR 266
           + +S  P+  K   RP ++  +PP +  +     S  K    S +P    RG  TTSR
Sbjct: 115 QKSSSSPSASKAESRPLRKRISPPPSENREKEKQSRDKERRRSRSPR-DRRGRATTSR 171


>AC006677-7|AAF39944.1|  281|Caenorhabditis elegans Hypothetical
           protein R05D8.9 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +3

Query: 258 NTKRLVVSWPRVVRAGVSESGFGFVAELVCKCCLLAIGGAELLLNGLLRRFRKVGRLDVL 437
           N +RL  +   ++++GV ES    VA       L A  G + L+N  +++F   GRLD+L
Sbjct: 40  NAERLEETRQEILKSGVPESHVLSVAT-----DLAAEKGQDELVNSTIQKF---GRLDIL 91

Query: 438 LNSDKGLF 461
           +N+    F
Sbjct: 92  VNNAGAAF 99


>Z83103-1|CAB05474.1|  358|Caenorhabditis elegans Hypothetical
           protein D1025.1 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -3

Query: 400 RRPFKRSSAPPIANKQHLHTSSATKPNPLSDTPALT-TRGHDTTSRLVLLQRKTNSINMI 224
           RRP + + +  IAN  H   + + +P+  + +P  T T+    T+R V    KT     I
Sbjct: 33  RRPQRMAKSVAIANMTHTPAALSHQPSSSNPSPKKTPTKRTSGTARRVSSSIKTTPALKI 92

Query: 223 DFTGGRTSCESARVGT 176
           D        ES    T
Sbjct: 93  DSLESSEETESLSKST 108


>Z48582-1|CAA88465.1|  490|Caenorhabditis elegans Hypothetical
           protein F27E5.3 protein.
          Length = 490

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 451 LSEFRSTSKRPTFRKRLRRPFKRSSAPPIANKQHLHTSSATKP-NPLSDTP 302
           +S+  +    P F  +  +P  +   PP+  +Q  H    + P  PL ++P
Sbjct: 216 VSDDETQKLTPIFLPQPYKPSSQQGPPPMLTRQPFHAQKTSPPKKPLEESP 266


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
 Frame = -3

Query: 424 RPTFRKRLRRPFKRSSAPPIANKQHLH-TSSATKPNPLSDTPALTTRGHDTTSRLVLLQR 248
           +P     + RP    S PP+    H H  S++   +PL     L T  +       LL+R
Sbjct: 80  QPDIHSAIYRPHHYYS-PPVYPGSHYHGLSTSQHSSPLYQRRMLPTPKNSGGIARKLLKR 138

Query: 247 KTN--------SINMIDFTGGRTSCESARV 182
            TN        +  + + + GRTSCESA V
Sbjct: 139 CTNPDLMRLQRTTEIREQSVGRTSCESAIV 168


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 382 SSAPPIANKQHLHTSSATKPNPLSDTPALTT 290
           S+ PP+A +  L +SS+T   P   +PA TT
Sbjct: 322 STPPPVAPRAVLGSSSSTSRLPNRSSPATTT 352


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 382 SSAPPIANKQHLHTSSATKPNPLSDTPALTT 290
           S+ PP+A +  L +SS+T   P   +PA TT
Sbjct: 502 STPPPVAPRAVLGSSSSTSRLPNRSSPATTT 532


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -2

Query: 509 PRSKKRCCTLGSFDALKKSLVGVQKYIQATDLSEASQEAV*KKLRATDCQ*TAFTHELCD 330
           PR ++R   + +   LKK++   Q    + D SE  + A  ++ R  +   +A T +  D
Sbjct: 226 PRERRRAAAISAIGVLKKAIEDTQSEESSADSSEERERARSRRKRKDEAS-SAVTSDEED 284

Query: 329 ETEPA 315
           + + A
Sbjct: 285 QEDLA 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,927
Number of Sequences: 27780
Number of extensions: 286474
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)