Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1759
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 98 7e-22
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 29 0.52
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 29 0.68
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 28 1.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 27 2.1
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 27 2.7
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 6.3
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.3
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 6.3
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 98.3 bits (234), Expect = 7e-22
Identities = 49/129 (37%), Positives = 76/129 (58%)
Frame = +2
Query: 17 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERSAV 196
E ++ L E K + +YCPYSNF+VGA +++++ + G N+EN++ +CAER A+
Sbjct: 4 EDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAERVAI 63
Query: 197 AKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVLCTK 376
KAV GYTKF + +++ + T PCG+CRQ + EF DI +Y+ + T
Sbjct: 64 TKAVSMGYTKFMAIGVMSAKGRVT-PCGICRQVIREFSK---DINVYMFHDDGGYDMKT- 118
Query: 377 LSHLLPLSF 403
+ LLP SF
Sbjct: 119 IEELLPDSF 127
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 395 LSFVSFKKDSVITVKTELKKKNNESDSIS 481
L +SF+KD +I VK ELK N ++ ++
Sbjct: 130 LKLISFQKDGIILVKNELKYPNIQTARVN 158
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 28.7 bits (61), Expect = 0.68
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 287 RQTLNEFCSSDGDIEIYLS----RPTMDTVLCTKLSHLLPLSFVSFKKDSVITVKTELKK 454
R+ FCS+D D+ I+ + + DTV + L+ LS+ FKK + + +L+
Sbjct: 806 RKKCGSFCSAD-DVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHVFTPEDLRL 864
Query: 455 KNNESDSISVIT 490
E S++ T
Sbjct: 865 AVEEYKSLNAYT 876
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +2
Query: 122 SRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAH 253
+++Y+G + S + P + +RS + +CD F+ ++ + H
Sbjct: 563 TKLYSGTGVIVSVVPPLIVVDRSVIPVDICDIRLTFQSMSAMGH 606
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 5 NSLDETVQNL-LMEAVKIRKRAYCPYSNFSVGAAILTEEDS 124
N+ DE + L L++ R A CP N + A++LT D+
Sbjct: 433 NTADEFTEQLNLLKNEVARLSAICPSPNSGINASVLTNADN 473
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 172 RWCQSGVLNVASGVHSRIFFGKYSGTNRKIGIRTI 68
+W V G ++ +F G+ TNR++ I+ I
Sbjct: 8 KWTYVKERKVGEGTYAVVFLGRQKETNRRVAIKKI 42
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 307 ELVEGLPTYPAGRSEFSLMGYYSHTF 230
+LVEG P G S F +GY S F
Sbjct: 408 QLVEGSTVPPIGTSSFDYIGYSSEKF 433
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 230 KCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVL 367
+C A + ++F+A G+ ++ LNEF +I YLS ++ VL
Sbjct: 224 ECFASIV--QKFSAIGGLIKKALNEFSLYKTNISFYLSNFIVNGVL 267
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 244 YSHTFKFRVTVTDSLRNSRPLCAHRWCQSGVLNVASGVHSRI 119
+SH++K+ + + S+ A SG++++AS +HS I
Sbjct: 100 WSHSYKWWIVIQVSVITIVVTFASSVYSSGIIDIASELHSSI 141
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 5 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTL 163
NS+++ L+ E K+R Y + +L + SR Y ENS L
Sbjct: 273 NSIEDWDYELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYWPYTSENSVL 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,654
Number of Sequences: 5004
Number of extensions: 44009
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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