Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1759
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0473 - 29598704-29599642                                         52   5e-07
06_03_0739 + 24004629-24005219                                         42   5e-04
11_03_0032 - 9105130-9105286,9105321-9105384,9106355-9106487           30   1.2  
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    29   3.7  
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80...    28   6.5  
02_03_0144 + 15694766-15694883,15694980-15697612                       28   6.5  
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    27   8.6  

>01_06_0473 - 29598704-29599642
          Length = 312

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
 Frame = +2

Query: 17  ETVQNLLMEAV-KIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIE--NSTLTPSMCAER 187
           ETV++LL   V    +RA  P S F VGA  L     R+YAG N+E     L+ S+ AE+
Sbjct: 38  ETVEDLLPLLVPSAMRRARAPISRFPVGAVGLGAS-GRVYAGVNLEFRGLPLSHSVHAEQ 96

Query: 188 SAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDG 322
             V  A   G ++ + VA V+H      PCG CRQ L E   + G
Sbjct: 97  FLVVNAAAAGESELRAVA-VSHM-----PCGHCRQFLQEIRGAGG 135


>06_03_0739 + 24004629-24005219
          Length = 196

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = +2

Query: 59  KRAYCPYSNFSVGAAILTEEDSRMYAGCNIE--NSTLTPSMCAERSAVAKAVCDGYTKFK 232
           +RA  P S F VGA  L      +YA  N+E     L+ S+ AE+  V  A   G +K  
Sbjct: 2   RRARVPISRFPVGAVGLGMSGC-IYASVNLEFRGLPLSHSIHAEQFLVVNAAAVGKSKL- 59

Query: 233 CVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVLCTKLSHLLPLSF 403
           C   ++H      PCG CRQ L E   + G I I +   T        +S LLP  F
Sbjct: 60  CAIAISHM-----PCGHCRQFLQEIRGA-GGIRIIV---TSSDAKWRTVSSLLPRPF 107


>11_03_0032 - 9105130-9105286,9105321-9105384,9106355-9106487
          Length = 117

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 56  RKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERSA 193
           R RA+ P+ N+ V   +L    SR Y  CN++   L  S  A  SA
Sbjct: 55  RMRAFVPFKNYIV-CHLLLNSQSRQYEECNLKTVVLQNSDNAGSSA 99


>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 355 HCRPAQVDFDVT--VRTTELVEGLPTYPAGRSEFSL 254
           HC  A   +D+T  ++T  L   L  YP GR+  SL
Sbjct: 214 HCENAHFTYDITSKLKTKFLGNSLEVYPLGRTRVSL 249


>11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-804504,
            804819-804883
          Length = 961

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 329  EIYLSRPTMDTVLCTKLSHLLPLSFVSFKKDSVITVKTELKKKNNESDSISVIT*V*FYG 508
            +IY+S+  +    C + S  L LSF +   D       E+ +K N+    SV+     Y 
Sbjct: 813  DIYVSKKKIAKFQCGRCSKALMLSFPATNSDDAKLSNKEVNRKPNKPVHNSVVGMEGGYS 872

Query: 509  FNQE 520
            F+ E
Sbjct: 873  FSAE 876


>02_03_0144 + 15694766-15694883,15694980-15697612
          Length = 916

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 329 EIYLSRPTMDTVLCTKLSHLLPLSFVSFKKDSVITVKTELKKKNNESDSISV 484
           +IY+S+  M  + C + S +L LSF +       + K    K N    SI V
Sbjct: 766 DIYISKTKMGKMQCGQCSKVLVLSFPAIHHACANSSKEVASKSNKHKGSIVV 817


>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDS 124
           ++L E  Q+  +E  K RK A C  S+  VG  +LT   S
Sbjct: 405 DTLIEKKQDTSVEESKRRKAAVCSISSVCVGVVVLTTSAS 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,137,046
Number of Sequences: 37544
Number of extensions: 269234
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)