Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1759
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61949-3|AAB03151.1| 166|Caenorhabditis elegans Cytidine deamin... 113 9e-26
U64861-1|AAB04993.1| 158|Caenorhabditis elegans Cytidine deamin... 103 1e-22
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 3.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 3.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 3.3
AC006651-2|AAP82649.1| 72|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 28 5.8
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 28 5.8
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 28 5.8
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U61949-3|AAB03151.1| 166|Caenorhabditis elegans Cytidine deaminase
protein 2 protein.
Length = 166
Score = 113 bits (272), Expect = 9e-26
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +2
Query: 5 NSLDETVQN--LLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMC 178
NSL + + + L+ A KRA+CPYS F VGAA+LTE + GCN+EN++ ++C
Sbjct: 4 NSLPQDISDVELVHLARAAMKRAHCPYSKFPVGAALLTES-GEIVQGCNVENASYGGTIC 62
Query: 179 AERSAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMD 358
AERSA+ AV GYTKF+ +A+V E +PCG+CRQ L EF GD ++ + + +
Sbjct: 63 AERSAIVSAVSQGYTKFRAIAVVTELSEPASPCGLCRQFLVEF----GDYKVVVGTASNN 118
Query: 359 TVLCTKLSHLLPLSFVSFKKDSVITVKTELKKKNNESDS 475
+L T LLP +F D+ K K + D+
Sbjct: 119 KILITSTRALLPFAFTPESLDTFEQEKASEAKGLKQDDA 157
>U64861-1|AAB04993.1| 158|Caenorhabditis elegans Cytidine deaminase
protein 1 protein.
Length = 158
Score = 103 bits (246), Expect = 1e-22
Identities = 57/156 (36%), Positives = 87/156 (55%)
Frame = +2
Query: 8 SLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAER 187
+L E Q L+ +A+ + AYC YSNF VGAA++ + D + G N EN++ ++CAER
Sbjct: 7 NLTEFEQQLVDKAIGAMENAYCKYSNFKVGAALVCD-DGEIIIGANHENASYGATICAER 65
Query: 188 SAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVL 367
SA+ A+ G+ KFK + + +PCGVCRQ L EF GD ++ L T D ++
Sbjct: 66 SAIVTALTKGHRKFKYIVVATELEAPCSPCGVCRQVLIEF----GDYKVILGSSTSDQII 121
Query: 368 CTKLSHLLPLSFVSFKKDSVITVKTELKKKNNESDS 475
T LLP +F D +TE +K +N+ ++
Sbjct: 122 ETTTYELLPYAFTPKSLDD-HEKETEERKHHNDHNN 156
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
protein F46C3.3 protein.
Length = 2557
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 251 HQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVLCTKLSHLLPLSFVSF 412
HQ T G +QTL + + D + +L RPT D+ L+H L + +F
Sbjct: 730 HQALGTENSGQLQQTLVGYIDINEDAKKFLERPTSDSDATETLTHYLTVPMKNF 783
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 TEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAHQREFT-APCGVC 286
T+ R+Y+ C+ N+ ++C R D YT + + T AP +C
Sbjct: 481 TDGSCRVYSACSKRNTCDKNAICLNRF-------DSYTCQCRPGYIDLSADLTNAPGRIC 533
Query: 287 RQTLNEFCSSDGDIEIY 337
++ +NE SSD + Y
Sbjct: 534 KELINECASSDNECSPY 550
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 TEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAHQREFT-APCGVC 286
T+ R+Y+ C+ N+ ++C R D YT + + T AP +C
Sbjct: 1065 TDGSCRVYSACSKRNTCDKNAICLNRF-------DSYTCQCRPGYIDLSADLTNAPGRIC 1117
Query: 287 RQTLNEFCSSDGDIEIY 337
++ +NE SSD + Y
Sbjct: 1118 KELINECASSDNECSPY 1134
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 TEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAHQREFT-APCGVC 286
T+ R+Y+ C+ N+ ++C R D YT + + T AP +C
Sbjct: 481 TDGSCRVYSACSKRNTCDKNAICLNRF-------DSYTCQCRPGYIDLSADLTNAPGRIC 533
Query: 287 RQTLNEFCSSDGDIEIY 337
++ +NE SSD + Y
Sbjct: 534 KELINECASSDNECSPY 550
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 TEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAHQREFT-APCGVC 286
T+ R+Y+ C+ N+ ++C R D YT + + T AP +C
Sbjct: 1065 TDGSCRVYSACSKRNTCDKNAICLNRF-------DSYTCQCRPGYIDLSADLTNAPGRIC 1117
Query: 287 RQTLNEFCSSDGDIEIY 337
++ +NE SSD + Y
Sbjct: 1118 KELINECASSDNECSPY 1134
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 TEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAHQREFT-APCGVC 286
T+ R+Y+ C+ N+ ++C R D YT + + T AP +C
Sbjct: 1065 TDGSCRVYSACSKRNTCDKNAICLNRF-------DSYTCQCRPGYIDLSADLTNAPGRIC 1117
Query: 287 RQTLNEFCSSDGDIEIY 337
++ +NE SSD + Y
Sbjct: 1118 KELINECASSDNECSPY 1134
>AC006651-2|AAP82649.1| 72|Caenorhabditis elegans Hypothetical
protein H06I04.7 protein.
Length = 72
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 104 ILTEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCV 238
I EE+ + Y N++ + C E+ + C+GY K CV
Sbjct: 18 IAPEENHKTYCEVLTSNNSNCTAYCKEKPECSWGRCEGYFKTNCV 62
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical
protein F33A8.1 protein.
Length = 897
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 5 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 157
N+LD +Q ++ A++IRK + Y ++ EED ++ N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 170 SMCAERSAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLN 301
+MC E + + D Y + V + ++E PC +C + N
Sbjct: 453 TMCKETDTSEQRMKDHYFETHLVIAKSEEKESKYPCAICEEDFN 496
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin
protein.
Length = 897
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 5 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 157
N+LD +Q ++ A++IRK + Y ++ EED ++ N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 170 SMCAERSAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLN 301
+MC E + + D Y + V + ++E PC +C + N
Sbjct: 453 TMCKETDTSEQRMKDHYFETHLVIAKSEEKESKYPCAICEEDFN 496
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Frame = +2
Query: 71 CPYSNFSVGAAILTEEDSR--MYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAI 244
C F+V A+ R A C S C + S C T C +
Sbjct: 3 CVIILFAVALAVAQASSIRETRQASCGCAQSVQPTCSCQQASQQYSCSCQPSTPCSCASS 62
Query: 245 VAHQREFTAPCGVCRQTLNEFCSSD 319
+Q + + C+Q+ ++ C S+
Sbjct: 63 QQYQLQTSQCMPACQQSCSQQCQSN 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,969
Number of Sequences: 27780
Number of extensions: 253081
Number of successful extensions: 648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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