Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1757
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.39
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.68
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 0.89
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 28 1.2
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 1.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.6
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 3.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 8.3
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 317 CEPCNRTCENPFPVCPAQCARGCFCKDGLVRDKDGKCVELEQCSNLKHLKLG 472
CE ++ E F +C AQ + FC+DG+++ ++L+ SNL+ +K G
Sbjct: 202 CEKSDKAIEKTF-LC-AQLFK-TFCEDGVLQTFQPGFIQLDIASNLQEIKKG 250
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 0.68
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +2
Query: 77 CRANERFLECGCRKTCRNPAPNCRAMCITGCFCEEGQVNNDNGVCVNLADCPQAASAYKL 256
C ANE ++ C + P C +C C Q N C + Q A +
Sbjct: 511 CTANE--VQVTCEQLQNGFIPTCERLCTILLSCGRHQCNKK---CCSGYSKAQTRLARRP 565
Query: 257 QTTEPRFDGGKCPQNEEYKFCEPCNR--TCENPFPVCPAQCARG 382
+ + R+ EE+ PCN+ +C N F C C RG
Sbjct: 566 KGAKLRYHLLTEEFEEEHICFRPCNKKLSCGNHF--CQHMCHRG 607
Score = 27.9 bits (59), Expect = 1.2
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Frame = +2
Query: 113 RKTCRNPAPNCRAMC--ITGC--FCEEGQVNNDNGVCVNLADCPQAASAYKLQTTEPRFD 280
RK+C +P P C +C + C C+ G C P +A ++Q T +
Sbjct: 465 RKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQ 524
Query: 281 GGKCPQNEE----YKFC--EPCNRTCENPFPVCPAQCAR 379
G P E C CN+ C + + + AR
Sbjct: 525 NGFIPTCERLCTILLSCGRHQCNKKCCSGYSKAQTRLAR 563
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.89
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 234 KPLPHTSCRQQSHASMEGNALKT-RSTNSASPVTGLARIRSRCVQRS---APEDVS 389
KP+P T + SHA + N T R+ S ++ SR V++S AP D S
Sbjct: 129 KPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSDPS 184
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 396 SLQKHPRAHCAGHTGNGFSQVLLQGSQNLYSSF*GHFPPSKRGSVVCSLYAEAA*GQSAK 217
S Q +C + GF V++QGS + Y F F ++ VCS+ + Q A+
Sbjct: 493 SAQGKQLRYCGNNAAEGFDDVVIQGSLSDY-KFACFFTKGEKVVGVCSIMKDPVVSQCAR 551
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 474 SPSLRCFKFEHCSNSTHFPSLSLTRPSLQKHPRAHCAGHTGN 349
S R E CS+ + P L+L P + P AGHT +
Sbjct: 270 SEHARSVASETCSSDPNNPKLNLKAPVFSEAPIREYAGHTAD 311
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +3
Query: 258 RQQSHASMEGNA-LKTRSTNSASPVTGLARIRSRCVQR------SAPEDVSVKTVW*GTK 416
R++S ++ G++ TRST S +P+T L +R + R P+++ + W G K
Sbjct: 620 RKKSKYNLPGSSGFMTRSTKSTNPMTPLNWLRGISMGRLGNADWEVPQNLGEELSWIGQK 679
Query: 417 TENV 428
NV
Sbjct: 680 YSNV 683
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 212 VNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCPAQ 370
++LAD Y + T G P+N +Y P N++ + P+CP +
Sbjct: 123 IDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS-SHYHPMCPIE 174
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = +2
Query: 11 SIFICLSLCYIVN---EVYG 61
SIF+ LS+CY +N +VYG
Sbjct: 1302 SIFLILSICYTINICVKVYG 1321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,975
Number of Sequences: 5004
Number of extensions: 52291
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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