Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1757
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 31 0.92
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 30 1.2
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 30 1.2
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 30 1.6
04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738 29 2.1
06_02_0175 - 12624608-12625297 28 4.9
12_01_0197 + 1456296-1456668,1456930-1458746 28 6.5
04_01_0528 - 6917414-6919849 28 6.5
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 8.5
05_05_0244 - 23564267-23564873,23564971-23565149 27 8.5
05_03_0428 + 13899295-13899669 27 8.5
04_01_0530 - 6928528-6929500,6929514-6930964 27 8.5
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 27 8.5
01_05_0768 + 25036945-25037296,25037499-25037722,25037902-250379... 27 8.5
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 323 PCNRTCENPFPVCPAQCARGCF-CK--DGLVRDKD 418
P R CE+P P C + A GC C+ + L+RD D
Sbjct: 40 PSPRHCESPCPACRGRVASGCLACRRWEHLLRDGD 74
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 272 RFDGGKCPQNEEYKFCEPCNR 334
R+ GK P + EYKF EPC +
Sbjct: 462 RYIAGKVPAHVEYKFLEPCRK 482
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 134 APNCRAMCITGCFCEEGQVNNDNGVC 211
A +C+A C++ CFC ++ ++G C
Sbjct: 363 AADCQAACMSDCFCVAALLDTNDGTC 388
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Frame = +2
Query: 215 NLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPV-CPAQCARGCFC 391
+L D AA + GG+ P PC C A C CFC
Sbjct: 317 DLIDAGDAAGGCTASSGAGECTGGREPTLNVSWADTPCGVLAAGTSAADCQAACMSDCFC 376
Query: 392 KDGLVRDKDGKCVELEQCSNLKHLKLGENY 481
L+ DG C +Q L++ + G Y
Sbjct: 377 VAALLDTNDGTCT--KQQLPLRYGRAGGGY 404
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 231 LKPLPHTSCRQQSHASMEGNALKTRSTNSAS 323
L+ LPH SC+ S +GN+L T + +A+
Sbjct: 30 LRRLPHVSCQANRGGSRDGNSLSTSAAAAAA 60
>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
Length = 707
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +2
Query: 194 NDNGVCVNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENP--FPVCPA 367
+D+ VC+N + A SAY ++ + G P + CE N CE+P +P C
Sbjct: 258 SDHSVCLNYSS--GAKSAYMCNCSKG-YHGN--PYLQGSNGCEDINE-CEHPESYP-CYG 310
Query: 368 QCAR-----GCFCKDGLV 406
+C CFC+DG+V
Sbjct: 311 ECHNKDGGFDCFCRDGVV 328
>06_02_0175 - 12624608-12625297
Length = 229
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 305 EYKFCEPCNRTCENPFPVCPAQCARGCF 388
EY C C VCP QC CF
Sbjct: 189 EYARCTAATGRCRGALLVCPMQCEGPCF 216
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 143 CRAMCITGCFCEEGQVNNDNGVC 211
C CI+ C C+E Q NG C
Sbjct: 285 CWNTCISDCTCKEFQYQEGNGTC 307
>04_01_0528 - 6917414-6919849
Length = 811
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 143 CRAMCITGCFCEEGQVNNDNGVC 211
CR +C+ CFC N + C
Sbjct: 389 CRRLCVIDCFCSVAVFNKPSNTC 411
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 414 LSLTRPSLQKHPRAHCAGHTGNGFSQVL 331
L T S++ P+ C G+ GNGFS+++
Sbjct: 185 LPWTSASVRPPPKHSCEGYFGNGFSRLV 212
>05_05_0244 - 23564267-23564873,23564971-23565149
Length = 261
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 326 CNRTCENPFPVCPAQCARG-CFCKDGLVRDKD-GKCVELEQCSNLKHLKLGENYKQPIPS 499
C +P P+ R C +++D GKCV LE+ N+K ++ E Y +
Sbjct: 41 CLVAATSPEPIADLLSLRATCKAMHAAAKERDVGKCVPLERLDNMKWME-NERYLAIVNH 99
Query: 500 RVNCG 514
V G
Sbjct: 100 LVGAG 104
>05_03_0428 + 13899295-13899669
Length = 124
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +2
Query: 158 ITGCFCEEGQVNNDNGVCVNLADCPQAASAYKLQTTEPRFDGGKCPQ--NEEYKFCEPCN 331
+ GC C+ ++ + + D +A T GG + + C +
Sbjct: 35 VVGCLCKRDRITR----AMEMFDTTRAVGCEPTIRTYNSLIGGSATSGGSRRHWTCSTSS 90
Query: 332 RTCENPFPVC 361
R+C +P PVC
Sbjct: 91 RSCRSPAPVC 100
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 143 CRAMCITGCFCEEGQVNNDNGVC 211
CR +C+T CFC + + C
Sbjct: 389 CRRLCVTDCFCAVAVFDKASSTC 411
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 335 TCENPFPVCPAQCARGCFCKDGLVRDKDGK-CV--ELEQCSNLKHLKLGENYKQPIPS 499
TC+ + P+ C D LVRD DG+ C EL L+ + L NY + +PS
Sbjct: 619 TCQKGSAILPSLS----MCHDVLVRDADGQHCAPSELSILQQLEAVVLVPNYNRLMPS 672
>01_05_0768 +
25036945-25037296,25037499-25037722,25037902-25037955,
25038006-25038253,25038909-25039296,25039392-25039802,
25039919-25040077,25040632-25040979
Length = 727
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/48 (27%), Positives = 17/48 (35%)
Frame = +2
Query: 221 ADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCP 364
A P Y+ + R P + FC+ CN T N CP
Sbjct: 595 AAVPCIVEVYEYPYSISRLHNRGLPHLDRCVFCDQCNETINNLLVACP 642
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,443
Number of Sequences: 37544
Number of extensions: 399374
Number of successful extensions: 1330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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