Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1755
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   4.3  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             24   5.6  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    24   5.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   7.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    24   7.5  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 226 AFPWAVGSHPF--SPR*IFWGVPP 161
           A PWA GSH +   P   +W V P
Sbjct: 288 ALPWAAGSHVYINIPSLSYWQVHP 311


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 309 LALTNGRLRFFEYLNGLETPE 247
           +ALTNGR+  ++  NG +  E
Sbjct: 1   MALTNGRIEEYDIQNGYQNTE 21


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 321 GNQGLA-LTNGRLRFFEYLNGLETPEAG 241
           GN  +A L NG LRFFE  +G E  + G
Sbjct: 345 GNLFVAGLENGELRFFETSSGNELTKFG 372


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 314 RALPSPTVGSGFLSILTVLRPPKPVSN 234
           RAL   T G G LS+L ++   K VSN
Sbjct: 646 RALTGHTDGRGQLSLLNIVVELKKVSN 672


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 108 RGGVRTLSHFDDRGRVDLNE 49
           RGG R+  H D  G  +LNE
Sbjct: 569 RGGPRSAEHVDILGHSELNE 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,963
Number of Sequences: 5004
Number of extensions: 17290
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)