Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1754
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   1.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   5.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   5.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.1  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   7.1  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    23   9.4  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +3

Query: 51  TMDVLPSGNLFRELQDVTDTGYFEWKLSLEDYWQQTCYEMERY 179
           T+    +GN     Q    TGY++  +  +   QQ  Y  + Y
Sbjct: 638 TIQAQATGNTHNPFQSQQATGYYKQPMQQQQNMQQPYYNQQNY 680


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 81   FRELQDVTDTGYFEWKLSLEDYWQQTCYEMERYLREEPRALKRR 212
            FR  + + D+G F  K    DY         R  REE   + RR
Sbjct: 904  FRNAEGINDSGSFTLKDEYFDYVDPFNIHYSRNQREEAENILRR 947


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 100 SPIPATSSGSCPWRTTGNRHATKWKDT 180
           +P  ++SSG  P +  GN+H+ K  D+
Sbjct: 247 APHHSSSSGHAPSQQGGNKHSYKKSDS 273


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 244  KLKRDRSLACARNAGFSAHFAVPADSA 324
            KL+      C +NA    HFA+  DS+
Sbjct: 3905 KLQNSWKRLCQKNAILRTHFAISEDSS 3931


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 39  IARITMDVLPSGNLFRELQDVTDTGYFEWKLSLEDYWQQT 158
           +A++   +LP+G  FR+++   D  + E + S ED ++ T
Sbjct: 76  LAKVQKSLLPAGKRFRDVRYAFDRLFGE-EASQEDVYKGT 114


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 238 LAQSSSW-ASRLFNALGSSRRYLS 170
           + Q  SW  +RLFN + S+++YLS
Sbjct: 344 IEQLFSWLGARLFNIVISNKKYLS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,423
Number of Sequences: 5004
Number of extensions: 18861
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)