Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1754
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0357 + 14852584-14853058,14853116-14855754 30 0.40
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 1.6
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 27 3.8
01_06_0203 - 27487469-27489787 27 3.8
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888... 27 5.0
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 26 6.6
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 26 8.7
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 26 8.7
>04_03_0357 + 14852584-14853058,14853116-14855754
Length = 1037
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 12 VVFKQTSYDIARITMDVLPSGNL--FRELQDVTDTGYFEWKLSL 137
+VFK D+ RI D +PS +L +E D TD Y+E +L+L
Sbjct: 853 IVFKDFKKDVLRI--DSIPSTSLDAIKEWLDTTDLKYYESRLNL 894
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 94 KTSPIPATSSGSCPWRTTGNRHATKWKDTCARNPGR*RGATPRTKTGLGLKLK 252
+ P+ A +GS PWR +GN A + + R G RT G + K
Sbjct: 9 RARPLTAEDAGSSPWRVSGNAIALSTQPSIRFEFDRIFGEECRTADVYGARTK 61
>02_03_0199 +
16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 57 DVLPSGNLFRELQDVTDTGYFEWKLSLEDYWQQ 155
D+ + NL EL +V+ G EWK L+D+W++
Sbjct: 892 DLSFTANLETELDNVS-AGSTEWKGLLKDFWER 923
>01_06_0203 - 27487469-27489787
Length = 772
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 61 CYPVAIFSANFKTSPIPATSSGSCPWRTTGNRHATKWKDTCARNPGR*RGATP 219
CYP + +K+ P T P+ T +T+ TC +PG ATP
Sbjct: 377 CYPKGLLFNGYKSPAFPGTLYLKVPYSTNLQASSTQSALTC--SPGSQEIATP 427
>06_03_1512 -
30688098-30688133,30688401-30688537,30688744-30688834,
30689265-30690815
Length = 604
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 211 ATPRTKTGLGLKLKRDRSLACARNAGFSAH 300
A+ T+TGLG L D + +AGFSAH
Sbjct: 229 ASGGTRTGLGDMLPFDMDIHPLDDAGFSAH 258
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 57 DVLPSGNLFRELQDVTDTGYFEWKLSLEDYWQQ 155
D+ + N+ EL +V+ G EWK L+D+W++
Sbjct: 901 DLSFTANMETELDNVS-AGSTEWKGLLKDFWER 932
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 165 EMERYLREEPRALKRRDAQDEDWARTQTK 251
E+ER +E A+KR+ ++E ++Q K
Sbjct: 157 ELERLQKEREEAMKRKQMEEEQQKQSQMK 185
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 124 GSCPWRTTGNRHATKWKDTCARNPGR*RGA 213
G+ W + GNR+ W+D C R G R A
Sbjct: 201 GALVW-SNGNRYDGGWEDGCPRGQGTFRWA 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,402,801
Number of Sequences: 37544
Number of extensions: 152204
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -