Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1754
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    26   5.8  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    26   7.7  

>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +2

Query: 137 GGLLATDMLRNGKIPAR 187
           G +L TDM+R+G++PA+
Sbjct: 24  GIILCTDMIRSGEVPAK 40


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 129 LSLEDYWQQTCYEMERYLREEPRALKRRDAQDED 230
           +SL+D +++T  ++E+ ++EE   L+   A +E+
Sbjct: 239 ISLDDTFEETRRKLEKEMKEENERLREMLADEEE 272


>U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical
           protein F38E9.1 protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 72  GNLFRELQDVTDTGYFE--WKLSLEDYWQQTC--YEMERYLREEPRALKRRD 215
           GNL   + D  DT +    + L++ +Y +     Y +  YL  +PRALK ++
Sbjct: 295 GNLNILISDQVDTEFCRLVYYLNINEYPEHKLDSYSVNPYLENKPRALKTKN 346


>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 138 EDYWQQTCYEMERYLREEPRAL 203
           ED+ ++   E+ER L EEPRAL
Sbjct: 314 EDWDERKVKEVERRLLEEPRAL 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,576,781
Number of Sequences: 27780
Number of extensions: 112419
Number of successful extensions: 315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)