Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1751
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical pr...    32   0.20 
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z81068-1|CAB02982.1|  232|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z92812-3|CAB07282.2|  342|Caenorhabditis elegans Hypothetical
           protein T03E6.3 protein.
          Length = 342

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -2

Query: 387 LTNKSFGVLTPSSGELKSHFKLILLRKFVI*NIIEVEPSLGEVGNF 250
           LT K    L PS+G+LK   K+ LLR F I  + +++P L  + NF
Sbjct: 142 LTWKMIYKLFPSTGKLKKSDKIALLRNF-IPKLWQIDPLLNYIRNF 186


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 88  KWFICERRRFDGVHRLMASPLYLFHQNVSSFIIHR-RNLSVEFTQSP 225
           ++F CER +FD  H L     +    ++S  I+++ RN++ +    P
Sbjct: 323 EYFTCERVQFDATHLLRVFDSHSALNSLSGSIVYKSRNVTFDIAYQP 369


>Z81068-1|CAB02982.1|  232|Caenorhabditis elegans Hypothetical
           protein F25H5.2 protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 91  WFICERRRFDGVHRLMASPLYLFHQNVSSFIIHRRNLSVEFTQ 219
           W +CE + FD V+       YL H++  +F   +  +++ F Q
Sbjct: 15  WALCEDKTFDNVY-TKVKMTYLVHKHQPTFAPCKYGVAMSFDQ 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,900
Number of Sequences: 27780
Number of extensions: 227572
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)