Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1750
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   8.6  

>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = -3

Query: 272 LLRTEFIFNVIIDLNFKI*FICLCVFGLRNHDIASIFYF 156
           + + +FI NV+ ++N++I  I + + G+ N  + ++  F
Sbjct: 99  IFQEQFIENVVKEINWEILAILISLSGIENGLVRNLSEF 137


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 232  KSIITLKINSVLSNLVDYYLCT 297
            K +  LK+N  LSNLV   LC+
Sbjct: 2365 KILDLLKVNQGLSNLVTKLLCS 2386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,227
Number of Sequences: 5004
Number of extensions: 19247
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)