Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1750
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   4.1  
AF038623-5|AAO91700.1|  531|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 269  LRTEFIFNVIIDLNFKI*FICLCVFGLRNHDIA 171
            LRTEFI N++I + F I  ICL V  + N   A
Sbjct: 920  LRTEFISNLMICMCFFIASICLKVDYIGNAQFA 952


>AF038623-5|AAO91700.1|  531|Caenorhabditis elegans Hypothetical
           protein T08B6.9 protein.
          Length = 531

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 108 QNQSVI*ILNHSEITMKIKNASNVMIS*TKYTQTNELNFKIQINYN 245
           Q+   I +L+  E T+  +    + I   K    +E NFKI   YN
Sbjct: 295 QDYMSIQMLSQDESTLSARVTMKLQIGRNKTALVHEWNFKITAKYN 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,171,046
Number of Sequences: 27780
Number of extensions: 106451
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)