Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1747
         (480 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1DQS6 Cluster: Putative uncharacterized protein; n=1; ...    34   1.4  
UniRef50_A6WA28 Cluster: Putative uncharacterized protein; n=1; ...    32   7.7  
UniRef50_A6G8A3 Cluster: Putative carbamoyl transferase; n=1; Pl...    32   7.7  
UniRef50_Q0UEV1 Cluster: Predicted protein; n=1; Phaeosphaeria n...    32   7.7  
UniRef50_P33666 Cluster: Putative uncharacterized protein ydbA; ...    32   7.7  

>UniRef50_Q1DQS6 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 835

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +1

Query: 331 SQATVSTDWSRS-YVDRHHRMTSRPLPP-RPIHDRFPANPTCP 453
           S +T++T  + S    +HHR +S P+PP  P+H RF ++ T P
Sbjct: 5   SSSTITTTSNPSPQRQQHHRHSSLPIPPSAPLHPRFSSDATSP 47


>UniRef50_A6WA28 Cluster: Putative uncharacterized protein; n=1;
           Kineococcus radiotolerans SRS30216|Rep: Putative
           uncharacterized protein - Kineococcus radiotolerans
           SRS30216
          Length = 146

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 319 HSCESQATVSTDWSRSYVDRHHRMTSRPLPPRPIHDRFPA 438
           H C + A   T  +R  V    RMT  P PP P+ DRF A
Sbjct: 50  HGCLAPARAQTQRNRHAV----RMTEHPQPPAPLADRFTA 85


>UniRef50_A6G8A3 Cluster: Putative carbamoyl transferase; n=1;
            Plesiocystis pacifica SIR-1|Rep: Putative carbamoyl
            transferase - Plesiocystis pacifica SIR-1
          Length = 1178

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 307  PASAHSCESQATVSTDWSRSYVDRHHRMTSRPLPP 411
            PA    C +Q+T +  W  SY++R      RPLPP
Sbjct: 1144 PAPCRGCRAQSTCAKTWP-SYLERFGTAELRPLPP 1177


>UniRef50_Q0UEV1 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 447

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +1

Query: 310 ASAHSCESQATVSTDWSRSYVDRHHRMTSRPLPPRPIHD 426
           A+  + E++AT S    R+   R +R++SRPLPPRP  D
Sbjct: 299 AATQAAETRATRS---HRNQDRRDNRVSSRPLPPRPADD 334


>UniRef50_P33666 Cluster: Putative uncharacterized protein ydbA;
           n=13; Gammaproteobacteria|Rep: Putative uncharacterized
           protein ydbA - Escherichia coli (strain K12)
          Length = 2003

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 373 DRHHRMTSRPLPPRPIHDRFPANPTCPVEGG 465
           D HH   + PLPP P  D     P  P  GG
Sbjct: 92  DDHHHRNNSPLPPTPPDDESDDTPVPPTPGG 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,411,371
Number of Sequences: 1657284
Number of extensions: 7874663
Number of successful extensions: 20903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20899
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)