Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1747
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   1.5  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    26   3.4  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   5.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.8  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   7.8  
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    25   7.8  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 159  VFKFSFFLNIKWCSVKTYRSELCYLTKHRYIHR 257
            VF+ S++L   WC  KT  S LC +   R+  +
Sbjct: 1692 VFEVSWYLEA-WCLAKTVLSMLCIIAIQRFFFK 1723


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 404 YRRDRFTIDSRPTRLVRLKGGS 469
           YR++R+ +DSRP R     G S
Sbjct: 242 YRKERYNVDSRPRRERHFHGRS 263


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 313 SAHSCESQATVSTDWSRSYVDRHHRMT 393
           +A +C+     +TDW R   +  HR+T
Sbjct: 505 TAITCQFTVLFNTDWHRVLQEARHRLT 531


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 391  TSRPLPPRPIHDRFPANPTCPV 456
            +S P PP P+    PA P  PV
Sbjct: 1473 SSAPAPPAPVSQLPPAVPNVPV 1494


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 211 IEVNCVT*QSIDTFIEKINLKIKMFQYEF 297
           +  + VT + +D F+E +  K+K ++ E+
Sbjct: 239 VSCSSVTGEGMDDFLEAVKAKVKEYEEEY 267


>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 314 RHTRVRARPPSVLIGVEAMWIAIIE*HQDLYRRD 415
           R TR +A   S  +G++A  + I + H D  R+D
Sbjct: 83  RVTREKANGASAPVGIDASKVVITKLHLDKDRKD 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,818
Number of Sequences: 5004
Number of extensions: 32784
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)