Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1747
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   1.5  
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    27   6.0  
05_04_0011 + 17139322-17139451,17139552-17140174                       27   6.0  

>02_01_0084 -
           573638-574305,574705-574900,574997-577246,578053-579174,
           579266-579370,579975-580028,580244-580344,580454-581423,
           582030-582203,582341-582643,582719-582856,582993-583247,
           584230-584370,585008-585289,585395-585540,585627-585690,
           585723-585799,586285-586301,587728-587867,587972-588029,
           588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 349 TDWSRSYVDRHHRMTSRPL-PPRPIHDRF 432
           T+W + + + HH +  RPL PP+   D F
Sbjct: 379 TNWKKEWTEPHHLLRKRPLMPPKEADDFF 407


>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 451 DKSGWPGIYRESVAAVKVLMSFYDGD 374
           D SG P  Y++++  V  ++ FYD D
Sbjct: 321 DPSGRPNSYQQAILGVGEVLQFYDND 346


>05_04_0011 + 17139322-17139451,17139552-17140174
          Length = 250

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 400 PLPPRPIHDRFPANPTCPVEG 462
           P+ P PIH+ FP  P  P  G
Sbjct: 195 PIGPDPIHNEFPPPPPSPPNG 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,565
Number of Sequences: 37544
Number of extensions: 205794
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)