Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1746
         (334 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6TRW7 Cluster: Popeye domain-containing protein 2C; n=...    33   1.3  
UniRef50_A0BSX8 Cluster: Chromosome undetermined scaffold_126, w...    32   2.9  
UniRef50_Q1VWB6 Cluster: Putative shikimate kinase; n=1; Psychro...    31   6.7  
UniRef50_Q3A4R7 Cluster: Radical SAM domain-containing protein; ...    30   8.9  
UniRef50_Q11TW2 Cluster: Possible cardiolipin synthase; n=1; Cyt...    30   8.9  

>UniRef50_Q6TRW7 Cluster: Popeye domain-containing protein 2C; n=1;
           Gallus gallus|Rep: Popeye domain-containing protein 2C -
           Gallus gallus (Chicken)
          Length = 415

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -3

Query: 317 ISRQLFKLLEKIFVPQNLWFDQRVPSFRHVSITRS 213
           IS +L+ L EK+F    L FD R+PS  HV   RS
Sbjct: 241 ISEKLYSLNEKLFAKFGLRFDIRLPSLYHVLAHRS 275


>UniRef50_A0BSX8 Cluster: Chromosome undetermined scaffold_126, whole
            genome shotgun sequence; n=7; cellular organisms|Rep:
            Chromosome undetermined scaffold_126, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 4577

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 328  FFVKSQDNYLNYWKKYLSHKIYGL 257
            FF+++Q NYL +WK+  +HK+Y L
Sbjct: 3927 FFIQNQVNYLKFWKE--AHKVYQL 3948


>UniRef50_Q1VWB6 Cluster: Putative shikimate kinase; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Putative
           shikimate kinase - Psychroflexus torquis ATCC 700755
          Length = 176

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 142 FALQIGAGTLSWSLRSKVVVQILDVKIITIKLNLRE 35
           + L +G GT  ++   K +++ LDV  + +KLNL E
Sbjct: 73  YVLSLGGGTPVYADNMKSIMEALDVTSVYVKLNLEE 108


>UniRef50_Q3A4R7 Cluster: Radical SAM domain-containing protein;
           n=2; Pelobacter carbinolicus DSM 2380|Rep: Radical SAM
           domain-containing protein - Pelobacter carbinolicus
           (strain DSM 2380 / Gra Bd 1)
          Length = 451

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 304 YLNYWKKYLSHKIYGLIKESPLSDMYR*QG 215
           Y+N W + +  K++G +   PL D++R +G
Sbjct: 364 YVNDWDRLVKPKVFGNVNRQPLLDIWRGEG 393


>UniRef50_Q11TW2 Cluster: Possible cardiolipin synthase; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Possible
           cardiolipin synthase - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 510

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 313 QDNYLNYWKKYLSHKIYGLIKESPL--SDMYR*QGHHK*LLT-S*FFFFIK*KLRNLTDI 143
           Q ++ ++W   LS  I GL+KE  +  +D  R +  H+       F+  ++ ++ NLT+ 
Sbjct: 220 QQSFESFWVDALSIPITGLVKEDDVTYTDTSRFERLHQYACNPDNFWPQVRKRISNLTET 279

Query: 142 FALQIGAGTLSW 107
           F +   +G L W
Sbjct: 280 FQVMRDSGRLKW 291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,740,113
Number of Sequences: 1657284
Number of extensions: 6104107
Number of successful extensions: 12877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12874
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)