Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1746
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   4.0  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    24   7.0  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       23   9.2  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    23   9.2  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        23   9.2  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    23   9.2  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   9.2  

>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 298 NYWKKYLSHKIYGLIK 251
           N + KYLSH+I+GL K
Sbjct: 77  NEYIKYLSHRIHGLRK 92


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 331 IFFVKSQDNYLNYWKKYLSHKIYGLIKESPL 239
           I ++ S    +  WK+Y++HK   ++ +  L
Sbjct: 324 IEYILSHPQVVPAWKEYINHKFTNMLAKGTL 354


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 317 ISRQLFKLLEKIFVPQNLWFDQRVPSF-RHVSITRSS*MITNQLIFFFY 174
           I+ Q+ ++++   + QN+ FD RVP F   +S+T    +    LI+  Y
Sbjct: 7   INTQVNRIMKNSSLVQNICFD-RVPLFIPRLSLTVKYCLAVKLLIYLLY 54


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 317 ISRQLFKLLEKIFVPQNLWFDQRVPSF-RHVSITRSS*MITNQLIFFFY 174
           I+ Q+ ++++   + QN+ FD RVP F   +S+T    +    LI+  Y
Sbjct: 7   INTQVNRIMKNSSLVQNICFD-RVPLFIPRLSLTVKYCLAVKLLIYLLY 54


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 317 ISRQLFKLLEKIFVPQNLWFDQRVPSF-RHVSITRSS*MITNQLIFFFY 174
           I+ Q+ ++++   + QN+ FD RVP F   +S+T    +    LI+  Y
Sbjct: 7   INTQVNRIMKNSSLVQNICFD-RVPLFIPRLSLTVKYCLAVKLLIYLLY 54


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 298 NYWKKYLSHKIYGLIKESPLSDM 230
           +YWKKY S+K    +K +   D+
Sbjct: 9   DYWKKYFSNKKKPTVKNTSDIDL 31


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 317 ISRQLFKLLEKIFVPQNLWFDQRVPSF-RHVSITRSS*MITNQLIFFFY 174
           I+ Q+ ++++   + QN+ FD RVP F   +S+T    +    LI+  Y
Sbjct: 7   INTQVNRIMKNSSLVQNICFD-RVPLFIPRLSLTVKYCLAVKLLIYLLY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,709
Number of Sequences: 5004
Number of extensions: 28030
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)