Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1746
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    27   2.8  
10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243     27   3.7  
02_02_0701 - 13067547-13067580,13067725-13067864,13068525-130686...    26   6.4  

>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
            28679221-28679265,28679523-28679594,28679721-28679759,
            28679966-28680061,28680492-28680566,28681717-28681764,
            28681888-28681971,28682141-28682341,28682394-28682561,
            28683232-28683372,28683470-28683517,28683845-28684087,
            28684184-28684297,28685134-28685163,28685361-28685951,
            28686033-28686620,28686744-28686863,28687764-28687938,
            28688397-28688562,28688653-28688755,28689227-28689319,
            28690759-28690918,28691754-28691872
          Length = 1275

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 81   CTTTFERRDQDNVPAPI 131
            CT  FE+R  DNVP P+
Sbjct: 1126 CTACFEQRTVDNVPIPL 1142


>10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243
          Length = 724

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 157 NLTDIFALQIGAGTLSWSL 101
           N  D++A+Q GAGT  WS+
Sbjct: 613 NAIDVWAMQQGAGTAVWSM 631


>02_02_0701 -
           13067547-13067580,13067725-13067864,13068525-13068659,
           13068761-13068808,13068834-13068859,13068990-13069057,
           13069101-13069112,13070359-13070415,13070817-13070935,
           13071700-13071810,13076755-13077066
          Length = 353

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 137 PPNWRGYVILVPTLKSSSTDP*CKNNYYQAESS*IASFR*VAQQF 3
           PPNW+ +V ++  L  +ST    +NN   A ++ +A     A+ F
Sbjct: 254 PPNWQDFVGIITLLIINSTISFIENNVVNAAAALMARVAPRAKSF 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,385,358
Number of Sequences: 37544
Number of extensions: 151460
Number of successful extensions: 283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)